Evidence map›Paper›PMID 18160404›Full record

ArticleThe Journal of biological chemistry2008

Structural and functional relationships in the virulence-associated cathepsin L proteases of the parasitic liver fluke, Fasciola hepatica.

Colin M Stack, Conor R Caffrey, Sheila M Donnelly, Amritha Seshaadri, Jonathan Lowther, Jose F Tort, Peter R Collins, Mark W Robinson, Weibo Xu, James H McKerrow and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. International journal of molecular sciences · 2022
    Article
  8. Structure determinants defining the specificity of papain-like cysteine proteases.Computational and structural biotechnology journal · 2022
    Review
  9. The Zoonotic Helminth ParasiteAnimals : an open access journal from MDPI · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cathepsin L3 FromFrontiers in immunology · 2019
    Article
  17. Article
  18. Substrate Specificity of Cysteine Proteases Beyond the SFrontiers in molecular biosciences · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Colin M StackInstitute for the Biotechnology of Infectious Diseases, University of Technology Sydney, Sydney, New South Wales 2007, Australia.
Conor R Caffrey
Sheila M Donnelly
Amritha Seshaadri
Jonathan Lowther
Jose F Tort
Peter R Collins
Mark W Robinson
Weibo Xu
James H McKerrow
Charles S Craik
Sebastian R Geiger
Rachel Marion
Linda S Brinen
John P Dalton
University of California, San Francisco · USUniversity of Technology Sydney · AUUniversidad de la República · UY

Funding

Host Protein Degradation by Schistosome ParasitesR01AI053247 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCKERROW, JAMES H. · 2003 to 2007
$1.7M
NIAID NIH HHS AI 053247NIAID NIH HHS R01 AI053247
6 · The paper itself

Abstract

The helminth parasite Fasciola hepatica secretes cysteine proteases to facilitate tissue invasion, migration, and development within the mammalian host. The major proteases cathepsin L1 (FheCL1) and cathepsin L2 (FheCL2) were recombinantly produced and biochemically characterized. By using site-directed mutagenesis, we show that residues at position 67 and 205, which lie within the S2 pocket of the active site, are critical in determining the substrate and inhibitor specificity. FheCL1 exhibits a broader specificity and a higher substrate turnover rate compared with FheCL2. However, FheCL2 can efficiently cleave substrates with a Pro in the P2 position and degrade collagen within the triple helices at physiological pH, an activity that among cysteine proteases has only been reported for human cathepsin K. The 1.4-A three-dimensional structure of the FheCL1 was determined by x-ray crystallography, and the three-dimensional structure of FheCL2 was constructed via homology-based modeling. Analysis and comparison of these structures and our biochemical data with those of human cathepsins L and K provided an interpretation of the substrate-recognition mechanisms of these major parasite proteases. Furthermore, our studies suggest that a configuration involving residue 67 and the "gatekeeper" residues 157 and 158 situated at the entrance of the active site pocket create a topology that endows FheCL2 with its unusual collagenolytic activity. The emergence of a specialized collagenolytic function in Fasciola likely contributes to the success of this tissue-invasive parasite.

Indexed as

Models, MolecularAnimalsBinding SitesCathepsinsCrystallography, X-RayFasciola hepaticaHelminth ProteinsHumansHydrogen-Ion ConcentrationProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidStructural Homology, ProteinStructure-Activity RelationshipSubstrate Specificitycathepsin L1, Fasciola hepaticaCathepsinsHelminth ProteinsRecombinant ProteinsVirulence Factors

Identifiers

PMID18160404
PMCPMC3979170
OpenAlexW2150840749

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.