Evidence map›Paper›PMID 18157808›Full record

ArticleMagnetic resonance in chemistry : MRC2007

Tailoring 13C labeling for triple-resonance solid-state NMR experiments on aligned samples of proteins.

Neeraj Sinha, Fabian V Filipp, Lena Jairam, Sang Ho Park, Joel Bradley, Stanley J Opella

Open access · greenAbstract read
In one paragraph

Article in Magnetic resonance in chemistry : MRC, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Membrane protein structure from rotational diffusion.Biochimica et biophysica acta · 2015
    Review
  2. Structure determination of membrane proteins by nuclear magnetic resonance spectroscopy.Annual review of analytical chemistry (Palo Alto, Calif.) · 2013
    Review
  3. Structure determination of a membrane protein in proteoliposomes.Journal of the American Chemical Society · 2012
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. 1H-13C separated local field spectroscopy of uniformly 13C labeled peptides and proteins.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2010
    Article
  9. Article
  10. Labeling strategies for 13C-detected aligned-sample solid-state NMR of proteins.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2009
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Neeraj SinhaDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0307, USA.
Fabian V Filipp
Lena Jairam
Sang Ho Park
Joel Bradley
Stanley J Opella
University of California, San Diego · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
NMR Studies of Biological Supramolecular StructuresR01EB001966 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2004 to 2007
$1.6M
Membrane Protein Structures:Phospholipid Bilayers (RMI)R01GM075877 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2005 to 2009
$1.4M
Tumor pyruvate kinase as key regulator of cancer metabolismR00CA154887 · NCI · UNIVERSITY OF CALIFORNIA, MERCED · PI FILIPP, FABIAN VOLKER · 2012 to 2014
$725k
NCI NIH HHS R00 CA154887NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41EB002031NIBIB NIH HHS R01 EB001966NIBIB NIH HHS R01EB001966NIGMS NIH HHS R01 GM075877NIGMS NIH HHS R01GM075877
6 · The paper itself

Abstract

In order to develop triple-resonance solid-state NMR spectroscopy of membrane proteins, we have implemented several different (13)C labeling schemes with the purpose of overcoming the interfering effects of (13)C-(13)C dipole-dipole couplings in stationary samples. The membrane-bound form of the major coat protein of the filamentous bacteriophage Pf1 was used as an example of a well-characterized helical membrane protein. Aligned protein samples randomly enriched to 35% (13)C in all sites and metabolically labeled from bacterial growth on media containing [2-(13)C]-glycerol or [1,3-(13)C]-glycerol enables direct (13)C detection in solid-state NMR experiments without the need for homonuclear (13)C-(13)C dipole-dipole decoupling. The (13)C-detected NMR spectra of Pf1 coat protein show a substantial increase in sensitivity compared to the equivalent (15)N-detected spectra. The isotopic labeling pattern was analyzed for [2-(13)C]-glycerol and [1,3-(13)C]-glycerol as metabolic precursors by solution-state NMR of micelle samples. Polarization inversion spin exchange at the magic angle (PISEMA) and other solid-state NMR experiments work well on 35% random fractionally and metabolically tailored (13)C-labeled samples, in contrast to their failure with conventional 100% uniformly (13)C-labeled samples.

Indexed as

BacteriophagesCarbon IsotopesMagnetic Resonance SpectroscopyMembrane ProteinsViral Core ProteinsViral Structural ProteinsCarbon IsotopesMembrane ProteinsViral Core ProteinsViral Structural Proteins

Identifiers

PMID18157808
PMCPMC5010364
OpenAlexW1989502881

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.