Evidence map›Paper›PMID 18157499›Full record

ArticleProtoplasma2007

Relationships between transcription, silver staining, and chromatin organization of nucleolar organizers in Secale cereale.

Ana D Caperta, Nuno Neves, Wanda Viegas, Craig S Pikaard, Sasha Preuss

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Chemical probes in plant epigenetics studies.Plant signaling & behavior · 2013
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Nucleolar dominance and ribosomal RNA gene silencing.Current opinion in cell biology · 2010
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ana D CapertaCentro Botânica Aplicada à Agricultura, Instituto Superior de Agronomia, Technical University of Lisbon, Lisboa. anadelaunay@isay.utl.pt
Nuno Neves
Wanda Viegas
Craig S Pikaard
Sasha Preuss
University of Lisbon · PTWashington University in St. Louis · US

Funding

MOLECULAR GENETICS OF NUCLEOLAR DOMINANCER01GM060380 · NIGMS · WASHINGTON UNIVERSITY · PI PIKAARD, CRAIG STUART · 2000 to 2012
$3.3M
Mechanism of nucleolar dominance in ArabidopsisF32GM069206 · NIGMS · WASHINGTON UNIVERSITY · PI PREUSS, SASHA B · 2003 to 2005
$131k
NIGMS NIH HHS 1 F32 GM69206NIGMS NIH HHS R01-GM60380
6 · The paper itself

Abstract

The nucleolar organizer regions (NORs) are composed of hundreds of rRNA genes, typically spanning several megabases. Cytologically, NORs include regions that are highly condensed and regions that are decondensed, the latter corresponding to regions at which associated proteins stain intensively with silver (Ag-NORs) and where active rRNA gene transcription is thought to occur. To test the relationship between rRNA gene activity, NOR silver staining, and rDNA (genes coding for rRNA) chromatin condensation, we used the DNA methyl-transferase inhibitor 5-azacytidine to evaluate the correlation between the epigenetic regulation of rRNA genes and NOR silver staining in the plant Secale cereale. Following 5-azacytidine treatment, we observed an increase in rRNA gene transcription as well as a reduction in the number of cells showing a significant difference in the size of the silver-stained domains in the two NORs. These transcriptional changes occurred concomitantly with an increase in nuclear and nucleolar size and were associated with the reallocation of most of the rDNA from perinucleolar heterochromatin into the nucleolus. Collectively, these results suggest that rRNA gene transcription, silver staining, and NOR decondensation are interrelated in S. cereale.

Indexed as

Silver StainingTranscription, GeneticAzacitidineCell NucleolusCell Nucleus SizeChromatinDNA MethylationInterphaseMeristemNucleolus Organizer RegionPlant RootsRibosomesRNA, RibosomalSecaleAzacitidineChromatinRNA, Ribosomal

Identifiers

PMID18157499
OpenAlexW2122318764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.