Evidence map›Paper›PMID 18156320›Full record

ArticleApplied and environmental microbiology2008

Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126.

Luc Schuler, Sinéad M Ní Chadhain, Yves Jouanneau, Christine Meyer, Gerben J Zylstra, Pascal Hols, Spiros N Agathos

Open access · greenAbstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Luc SchulerUnité de Génie Biologique, Institut des Sciences de la Vie, Université Catholique de Louvain, Place Croix du Sud, 2/19, B-1348 Louvain-la-Neuve, Belgium.
Sinéad M Ní Chadhain
Yves Jouanneau
Christine Meyer
Gerben J Zylstra
Pascal Hols
Spiros N Agathos
Rutgers, The State University of New Jersey · USCEA Grenoble · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUCLouvain · BE

Funding

VOLATILE ORGANIC CONTAMINANTS--QUANTIFYING THEIR MOVEMENT IN THE UNSATURATED ZONEP42ES004911 · NIEHS · MICHIGAN STATE UNIVERSITY · PI Timothy R. Zacharewski · 1989 to 2026
$64.9M
NIEHS NIH HHS P42 ES004911
6 · The paper itself

Abstract

In this study, the genes involved in the initial attack on fluorene by Sphingomonas sp. strain LB126 were investigated. The alpha and beta subunits of a dioxygenase complex (FlnA1-FlnA2), showing 63 and 51% sequence identity, respectively, to the subunits of an angular dioxygenase from the gram-positive dibenzofuran degrader Terrabacter sp. strain DBF63, were identified. When overexpressed in Escherichia coli, FlnA1-FlnA2 was responsible for the angular oxidation of fluorene, 9-hydroxyfluorene, 9-fluorenone, dibenzofuran, and dibenzo-p-dioxin. Moreover, FlnA1-FlnA2 was able to oxidize polycyclic aromatic hydrocarbons and heteroaromatics, some of which were not oxidized by the dioxygenase from Terrabacter sp. strain DBF63. The quantification of resulting oxidation products showed that fluorene and phenanthrene were the preferred substrates of FlnA1-FlnA2.

Indexed as

Base SequenceBlotting, SouthernDioxygenasesDNA PrimersElectrophoresis, Polyacrylamide GelFluorenesGas Chromatography-Mass SpectrometryMolecular Sequence DataMolecular StructurePolymerase Chain ReactionSequence Analysis, DNASequence HomologySphingomonasDioxygenasesDNA PrimersfluoreneFluorenes

Identifiers

PMID18156320
PMCPMC2258591
OpenAlexW2133587411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.