Evidence map›Paper›PMID 18097667›Full record

ArticleCurrent genetics2008

Molecular cloning of three pyranose dehydrogenase-encoding genes from Agaricus meleagris and analysis of their expression by real-time RT-PCR.

Roman Kittl, Christoph Sygmund, Petr Halada, Jindrich Volc, Christina Divne, Dietmar Haltrich, Clemens K Peterbauer

Abstract read
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In one paragraph

Article in Current genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Biochemical Characterization of Pyranose Oxidase fromInternational journal of molecular sciences · 2022
    Article
  2. Article
  3. TargetingBiology · 2020
    Article
  4. Article
  5. Article
  6. Multiplicity of enzymatic functions in the CAZy AA3 family.Applied microbiology and biotechnology · 2018
    Review
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Roman KittlDepartment of Food Sciences and Technology, BOKU, University of Natural Resources and Applied Life Sciences, Vienna, Austria.
Christoph Sygmund
Petr Halada
Jindrich Volc
Christina Divne
Dietmar Haltrich
Clemens K Peterbauer
BOKU University · ATCzech Academy of Sciences, Institute of Microbiology · CZAlbaNova · SE

Funding

Austrian Science Fund FWF P 16836
6 · The paper itself

Abstract

Sugar oxidoreductases such as cellobiose dehydrogenase or pyranose oxidase are widespread enzymes among fungi, whose biological function is largely speculative. We investigated a similar gene family in the mushroom Agaricus meleagris and its expression under various conditions. Three genes (named pdh1, pdh2 and pdh3) putatively encoding pyranose dehydrogenases were isolated. All three genes displayed a conserved structure and organization, and the respective cDNAs contained ORFs translating into polypeptides of 602 or 600 amino acids. The N-terminal sections of all three genes encode putative signal peptides consistent with the enzymes extracellular secretion. We cultivated the fungus on different carbon sources and analyzed the mRNA levels of all three genes over a period of several weeks using real-time RT-PCR. The glyceraldehyde-3-phosphate dehydrogenase gene from A. meleagris was also isolated and served as reference gene. pdh2 and pdh3 are essentially transcribed constitutively, whereas pdh1 expression is upregulated upon exhaustion of the carbon source; pdh1 appears to be additionally regulated under conditions of oxygen limitation. These data are consistent with an assumed role in lignocellulose degradation.

Indexed as

Gene Expression Regulation, FungalGenes, FungalAgaricusCarbohydrate DehydrogenasesCelluloseCloning, MolecularFungal ProteinsLigninMembrane ProteinsPolymerase Chain ReactionRNA, MessengerCarbohydrate DehydrogenasesCelluloseFungal ProteinsLigninlignocelluloseMembrane Proteinspyranose oxidaseRNA, Messenger

Identifiers

PMID18097667
OpenAlexW2077552876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.