Evidence map›Paper›PMID 18096626›Full record

ArticleNucleic acids research2008

Targeted induction of meiotic double-strand breaks reveals chromosomal domain-dependent regulation of Spo11 and interactions among potential sites of meiotic recombination.

Tomoyuki Fukuda, Kazuto Kugou, Hiroyuki Sasanuma, Takehiko Shibata, Kunihiro Ohta

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Molecular mechanisms and regulation of recombination frequency and distribution in plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  3. Chromosome-dependent aneuploid formation in Spo11-less meiosis.Genes to cells : devoted to molecular & cellular mechanisms · 2023
    Article
  4. Article
  5. Physical basis for long-distance communication along meiotic chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Repression of harmful meiotic recombination in centromeric regions.Seminars in cell & developmental biology · 2016
    Review
  11. Meiotic DSB patterning: A multifaceted process.Cell cycle (Georgetown, Tex.) · 2016
    Review
  12. Article
  13. Mechanism and regulation of meiotic recombination initiation.Cold Spring Harbor perspectives in biology · 2014
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Many functions of the meiotic cohesin.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Tomoyuki FukudaShibata Distinguished Senior Scientist Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan. tfukuda@riken.jp
Kazuto Kugou
Hiroyuki Sasanuma
Takehiko Shibata
Kunihiro Ohta
RIKEN · JPRIKEN Nishina Center · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meiotic recombination is initiated by programmed DNA double-strand break (DSB) formation mediated by Spo11. DSBs occur with frequency in chromosomal regions called hot domains but are seldom seen in cold domains. To obtain insights into the determinants of the distribution of meiotic DSBs, we examined the effects of inducing targeted DSBs during yeast meiosis using a UAS-directed form of Spo11 (Gal4BD-Spo11) and a meiosis-specific endonuclease, VDE (PI-SceI). Gal4BD-Spo11 cleaved its target sequence (UAS) integrated in hot domains but rarely in cold domains. However, Gal4BD-Spo11 did bind to UAS and VDE efficiently cleaved its recognition sequence in either context, suggesting that a cold domain is not a region of inaccessible or uncleavable chromosome structure. Importantly, self-association of Spo11 occurred at UAS in a hot domain but not in a cold domain, raising the possibility that Spo11 remains in an inactive intermediate state in cold domains. Integration of UAS adjacent to known DSB hotspots allowed us to detect competitive interactions among hotspots for activation. Moreover, the presence of VDE-introduced DSB repressed proximal hotspot activity, implicating DSBs themselves in interactions among hotspots. Thus, potential sites for Spo11-mediated DSB are subject to domain-specific and local competitive regulations during and after DSB formation.

Indexed as

DNA Breaks, Double-StrandedRecombination, GeneticBinding SitesChromosomes, FungalDNA-Binding ProteinsDNA, FungalDNA Topoisomerases, Type IIEndodeoxyribonucleasesMeiosisMeiotic Recombination Protein SPO11Proton-Translocating ATPasesRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsDNA-Binding ProteinsDNA, FungalDNA Topoisomerases, Type IIEndodeoxyribonucleasesGAL4 protein, S cerevisiaeMeiotic Recombination Protein SPO11Proton-Translocating ATPasesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSpo11 protein, S cerevisiaeTranscription FactorsVMA1 protein, S cerevisiae

Identifiers

PMID18096626
PMCPMC2241902
OpenAlexW2139468129

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.