Evidence map›Paper›PMID 18096616›Full record

ArticleNucleic acids research2008

Interaction of human tRNA-dihydrouridine synthase-2 with interferon-induced protein kinase PKR.

Megan Mittelstadt, Andrea Frump, Tuanh Khuu, Vennece Fowlkes, Indhira Handy, Chandrashekhar V Patel, Rekha C Patel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Naturally occurring modified ribonucleosides.Wiley interdisciplinary reviews. RNA · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Megan MittelstadtDepartment of Biological Sciences, University of South Carolina Columbia, SC 29208, USA.
Andrea Frump
Tuanh Khuu
Vennece Fowlkes
Indhira Handy
Chandrashekhar V Patel
Rekha C Patel
University of South Carolina · US

Funding

UofSC Postbaccalaureate Research Education ProgramR25GM066526 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ARMSTRONG, ALISSA RICHMOND, ELY, BERT · 2004 to 2024
$5.4M
University of South Carolina Initiative for Maximizing Student DevelopmentR25GM076277 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ELY, BERT · 2006 to 2015
$2.6M
REGULATION OF SMOOTH MUSCLE PROLIFERATIONR01HL063359 · NHLBI · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI PATEL, REKHA C · 2000 to 2003
$867k
NHLBI NIH HHS HL63359NHLBI NIH HHS R01 HL063359NIGMS NIH HHS R25 GM066526NIGMS NIH HHS R25 GM076277
6 · The paper itself

Abstract

PKR is an interferon (IFN)-induced protein kinase, which is involved in regulation of antiviral innate immunity, stress signaling, cell proliferation and programmed cell death. Although a low amount of PKR is expressed ubiquitously in all cell types in the absence of IFNs, PKR expression is induced at transcriptional level by IFN. PKR's enzymatic activity is activated by its binding to one of its activators. Double-stranded (ds) RNA, protein activator PACT and heparin are the three known activators of PKR. Activation of PKR in cells leads to a general block in protein synthesis due to phosphorylation of eIF2alpha on serine 51 by PKR. PKR activation is regulated very tightly in mammalian cells and a prolonged activation of PKR leads to apoptosis. Thus, positive and negative regulation of PKR activation is important for cell viability and function. The studies presented here describe human dihydrouridine synthase-2 (hDUS2) as a novel regulator of PKR. We originally identified hDUS2 as a protein interacting with PACT in a yeast two-hybrid screen. Further characterization revealed that hDUS2 also interacts with PKR through its dsRNA binding/dimerization domain and inhibits its kinase activity. Our results suggest that hDUS2 may act as a novel inhibitor of PKR in cells.

Indexed as

Amino Acid SequenceBinding SitesCell LineConserved SequenceeIF-2 KinaseHeLa CellsHumansMolecular Sequence DataOxidoreductasesProtein Structure, TertiaryRNA-Binding ProteinsRNA, Double-StrandedTwo-Hybrid System TechniqueseIF-2 KinaseOxidoreductasesPRKRA protein, humanRNA-Binding ProteinsRNA, Double-StrandedtRNA dihydrouridine synthase-2, human

Identifiers

PMID18096616
PMCPMC2241914
OpenAlexW2058913943

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.