Evidence map›Paper›PMID 18096403›Full record

ArticleJournal of structural biology2008

Unique structures in a tumor herpesvirus revealed by cryo-electron tomography and microscopy.

Wei Dai, Qingmei Jia, Eric Bortz, Sanket Shah, Jun Liu, Ivo Atanasov, Xudong Li, Kenneth A Taylor, Ren Sun, Z Hong Zhou

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

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  17. Electron tomography of paracrystalline 2D arrays.Methods in molecular biology (Clifton, N.J.) · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Wei DaiDepartment of Pathology and Laboratory Medicine, University of Texas Medical School at Houston, Houston, TX 77030, USA.
Qingmei Jia
Eric Bortz
Sanket Shah
Jun Liu
Ivo Atanasov
Xudong Li
Kenneth A Taylor
Ren Sun
Z Hong Zhou
University of California, Los Angeles · USBaylor College of Medicine · USFlorida State University · US

Funding

ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI CHIU, WAH · 1985 to 2011
$22.1M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
EM STUDIES ON MUSCLER01GM030598 · NIGMS · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 1985 to 2020
$4.9M
Reactivation of Kaposi's Sarcoma-Associated HerpesvirusR01CA091791 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUN, REN · 2001 to 2017
$4.4M
Role of Interleukin-6 in Gammaherpesvirus replicationR01DE015752 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUN, REN · 2003 to 2007
$1.6M
HCMV Envelope and Tegument Structures: Mechanisms of Viral Entry and AssemblyR01AI069015 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2007 to 2011
$1.5M
Structure and Assembly of KSHV Capsids and VirionsR01CA094809 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2002 to 2006
$1.3M
NCI NIH HHS CA091791/DE015752NCI NIH HHS CA94809NCI NIH HHS R01 CA091791NCI NIH HHS R01 CA094809NCRR NIH HHS P41 RR002250NCRR NIH HHS P41RR02250NIAID NIH HHS AI069015NIAID NIH HHS R01 AI069015NIDCR NIH HHS R01 DE015752NIGMS NIH HHS GM30598NIGMS NIH HHS R01 GM030598NIGMS NIH HHS R01 GM071940
6 · The paper itself

Abstract

Gammaherpesviruses, including the human pathogens Epstein-Barr virus and Kaposi's sarcoma-associated herpesvirus, are causative agents of lymphomas and other malignancies. The structural characterization of these viruses has been limited due to difficulties in obtaining adequate amount of virion particles. Here we report the first three-dimensional structural characterization of a whole gammaherpesvirus virion by an emerging integrated approach of cryo-electron tomography combined with single-particle cryo-electron microscopy, using murine gammaherpesvirus-68 (MHV-68) as a model system. We found that the MHV-68 virion consists of distinctive envelope and tegument compartments, and a highly conserved nucleocapsid. Two layers of tegument are identified: an inner tegument layer tethered to the underlying capsid and an outer, flexible tegument layer conforming to the overlying, pleomorphic envelope, consistent with the sequential viral tegumentation process inside host cells. Surprisingly, comparison of the MHV-68 virion and capsid reconstructions shows that the interactions between the capsid and inner tegument proteins are completely different from those observed in alpha and betaherpesviruses. These observations support the notion that the inner layer tegument across different subfamilies of herpesviruses has evolved significantly to confer specific characteristics related to viral-host interactions, in contrast to a highly conserved capsid for genome encapsidation and protection.

Indexed as

Models, MolecularCryoelectron MicroscopyNucleocapsidRhadinovirusTomographyVirion

Identifiers

PMID18096403
PMCPMC2714863
OpenAlexW2002126032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.