Evidence map›Paper›PMID 18094711›Full record

ArticleGenes and immunity2008

Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations.

N Limaye, K A Belobrajdic, A E Wandstrat, F Bonhomme, S V Edwards, E K Wakeland

Abstract read
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In one paragraph

Article in Genes and immunity, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Roles of CD48 in regulating immunity and tolerance.Clinical immunology (Orlando, Fla.) · 2016
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Evidence that Cd101 is an autoimmune diabetes gene in nonobese diabetic mice.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  11. Article
  12. Article
  13. Genetics of SLE: evidence from mouse models.Nature reviews. Rheumatology · 2010
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

N LimayeDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
K A Belobrajdic
A E Wandstrat
F Bonhomme
S V Edwards
E K Wakeland
The University of Texas Southwestern Medical Center · USCentre National de la Recherche Scientifique · FRHarvard University · US

Funding

INTEGRATIVE IMMUNOLOGY TRAINING PROGRAMT32AI005284 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Nan Yan · 2003 to 2026
$7.4M
NIAID NIH HHS T32 AI 005284
6 · The paper itself

Abstract

The evolutionary origin of genetic diversity in the SLAM/CD2 gene cluster, implicated in autoimmune lupus susceptibility in mice, was investigated by sequence analysis of exons from six members of the cluster in 48 wild mouse samples derived from the global mouse population. A total of 80 coding region SNPs were identified among the six genes analyzed, indicating that this gene cluster is highly polymorphic in natural mouse populations. Phylogenetic analyses of these allelic sequences revealed clustering of alleles derived from multiple Mus species and subspecies, indicating alleles at several SLAM/CD2 loci were present in ancestral Mus populations prior to speciation and have persisted as polymorphisms for more than 1 million years. Analyses of nonsynonymous/synonymous ratios using likelihood codon substitution models identified several segments in Cd229, Cd48 and Cd84 that were impacted by positive diversifying selective pressures. These findings support the interpretation that selection favoring the generation and retention of functional polymorphisms has played a role in the evolutionary origin of genetic polymorphisms that are predisposing to autoimmunity.

Indexed as

AllelesEvolution, MolecularGenetic Predisposition to DiseaseGenetics, PopulationAmino Acid SequenceAnimalsAnimals, LaboratoryAnimals, WildAntigens, CDAutoimmunityCodonExonsHaplotypesMiceMice, Inbred C57BLMice, Inbred NODAntigens, CDCodon

Identifiers

PMID18094711
OpenAlexW2122280942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.