Evidence map›Paper›PMID 18093918›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

An extended dynamical hydration shell around proteins.

Simon Ebbinghaus, Seung Joong Kim, Matthias Heyden, Xin Yu, Udo Heugen, Martin Gruebele, David M Leitner, Martina Havenith

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
21.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 700 citations in OpenAlex.

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  10. Direct evidence of acid-driven protein desolvation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  15. Human Serum Albumin: 3D Insight on Protein Hydration.International journal of molecular sciences · 2025
    Article
  16. Article
  17. Article
  18. Quantitative imaging of individual bacterial cells:Journal of biomedical optics · 2025
    Article
  19. Article
  20. Review

89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Simon EbbinghausLehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum 44780 Bochum, Germany.
Seung Joong Kim
Matthias Heyden
Xin Yu
Udo Heugen
Martin Gruebele
David M Leitner
Martina Havenith
Ruhr University Bochum · DEUniversity of Illinois Urbana-Champaign · USUniversity of Nevada, Reno · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The focus in protein folding has been very much on the protein backbone and sidechains. However, hydration waters make comparable contributions to the structure and energy of proteins. The coupling between fast hydration dynamics and protein dynamics is considered to play an important role in protein folding. Fundamental questions of protein hydration include, how far out into the solvent does the influence of the biomolecule reach, how is the water affected, and how are the properties of the hydration water influenced by the separation between protein molecules in solution? We show here that Terahertz spectroscopy directly probes such solvation dynamics around proteins, and determines the width of the dynamical hydration layer. We also investigate the dependence of solvation dynamics on protein concentration. We observe an unexpected nonmonotonic trend in the measured terahertz absorbance of the five helix bundle protein lambda(6-85)* as a function of the protein: water molar ratio. The trend can be explained by overlapping solvation layers around the proteins. Molecular dynamics simulations indicate water dynamics in the solvation layer around one protein to be distinct from bulk water out to approximately 10 A. At higher protein concentrations such that solvation layers overlap, the calculated absorption spectrum varies nonmonotonically, qualitatively consistent with the experimental observations. The experimental data suggest an influence on the correlated water network motion beyond 20 A, greater than the pure structural correlation length usually observed.

Indexed as

BiochemistryDNA-Binding ProteinsEscherichia coliHydrogen BondingModels, MolecularModels, StatisticalMutationProtein ConformationProtein FoldingProteinsRepressor ProteinsSolventsSpectrophotometryTemperatureViral Regulatory and Accessory ProteinsWaterDNA-Binding Proteinsphage repressor proteinsProteinsRepressor ProteinsSolventsViral Regulatory and Accessory ProteinsWater

Identifiers

PMID18093918
PMCPMC2410073
OpenAlexW2069586413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.