ArticleBMC bioinformatics2007
PARPs database: a LIMS systems for protein-protein interaction data mining or laboratory information management system.
Article in BMC bioinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
8 citing papers in PubMed.
- Ultrasound-triggered interfacial engineering-based microneedle for bacterial infection acne treatment.Science advances · 2023Article
- Transcriptional roles of PARP1 in cancer.Molecular cancer research : MCR · 2014Review
- Efficient sample tracking with OpenLabFramework.Scientific reports · 2014Article
- PARP-1 enhances the mismatch-dependence of 5'-directed excision in human mismatch repair in vitro.DNA repair · 2011Article
- MolabIS--an integrated information system for storing and managing molecular genetics data.BMC bioinformatics · 2011Article
- Organization of Biomedical Data for Collaborative Scientific Research: A Research Information Management System.International journal of information management · 2010Article
- Role of the peroxynitrite-poly(ADP-ribose) polymerase pathway in human disease.The American journal of pathology · 2008Review
- Transcriptional control by PARP-1: chromatin modulation, enhancer-binding, coregulation, and insulation.Current opinion in cell biology · 2008Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundIn the "post-genome" era, mass spectrometry (MS) has become an important method for the analysis of proteins and the rapid advancement of this technique, in combination with other proteomics methods, results in an increasing amount of proteome data. This data must be archived and analysed using specialized bioinformatics tools. DESCRIPTION: We herein describe "PARPs database," a data analysis and management pipeline for liquid chromatography tandem mass spectrometry (LC-MS/MS) proteomics. PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management, as well as data-mining of the peptides and proteins identified.
conclusionUsing this pipeline, we have successfully identified several interactions of biological significance between PARP-1 and other proteins, namely RFC-1, 2, 3, 4 and 5.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.