Evidence map›Paper›PMID 18086892›Full record

ArticleMolecular and cellular biology2008

Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II.

Lei Zhang, Aaron G L Fletcher, Vanessa Cheung, Fred Winston, Laurie A Stargell

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 80 citations in OpenAlex.

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  14. Novel Aspects of Nitrate Regulation inFrontiers in plant science · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lei ZhangDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523, USA.
Aaron G L Fletcher
Vanessa Cheung
Fred Winston
Laurie A Stargell
Colorado State University · USHarvard University · US

Funding

Factors Controlling Transcription and Chromatin in YeastR37GM032967 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WINSTON, FRED M. · 2004 to 2013
$4.9M
INSERTION MUTATION SUPPRESSORS IN YEASTR01GM032967 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WINSTON, FRED M. · 1985 to 2017
$3.6M
GENETIC ANALYSIS OF TRANSCRIPTION INITIATIONR01GM056884 · NIGMS · COLORADO STATE UNIVERSITY-FORT COLLINS · PI STARGELL, LAURIE A · 1998 to 2007
$1.8M
NIGMS NIH HHS GM056884NIGMS NIH HHS GM32967NIGMS NIH HHS R01 GM032967NIGMS NIH HHS R01 GM056884NIGMS NIH HHS R37 GM032967
6 · The paper itself

Abstract

We investigated the timing of the recruitment of Spn1 and its partner, Spt6, to the CYC1 gene. Like TATA binding protein and RNA polymerase II (RNAPII), Spn1 is constitutively recruited to the CYC1 promoter, although levels of transcription from this gene, which is regulated postrecruitment of RNAPII, are low. In contrast, Spt6 appears only after growth in conditions in which the gene is highly transcribed. Spn1 recruitment is via interaction with RNAPII, since an spn1 mutant defective for interaction with RNAPII is not targeted to the promoter, and Spn1 is necessary for Spt6 recruitment. Through a targeted genetic screen, strong and specific antagonizing interactions between SPN1 and genes encoding Swi/Snf subunits were identified. Like Spt6, Swi/Snf appears at CYC1 only after activation of the gene. However, Spt6 significantly precedes Swi/Snf occupancy at the promoter. In the absence of Spn1 recruitment, Swi/Snf is constitutively found at the promoter. These observations support a model whereby Spn1 negatively regulates RNAPII transcriptional activity by inhibiting recruitment of Swi/Snf to the CYC1 promoter, and this inhibition is abrogated by the Spn1-Spt6 interaction. These findings link Spn1 functions to the transition from an inactive to an actively transcribing RNAPII complex at a postrecruitment-regulated promoter.

Indexed as

Transcriptional ActivationChromosomal Proteins, Non-HistoneCytochromes cGene DeletionGene Expression Regulation, FungalHistone ChaperonesMutant ProteinsNuclear ProteinsPhenotypePromoter Regions, GeneticProtein BindingProtein SubunitsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTime FactorsChromosomal Proteins, Non-HistoneCYC1 protein, S cerevisiaeCytochromes cHistone ChaperonesMutant ProteinsNuclear ProteinsProtein SubunitsRNA Polymerase IISaccharomyces cerevisiae ProteinsSPN1 protein, S cerevisiaeSPT6 protein, S cerevisiaeSWI-SNF-B chromatin-remodeling complexTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID18086892
PMCPMC2258746
OpenAlexW2165187238

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.