Evidence map›Paper›PMID 18086878›Full record

ArticleMolecular and cellular biology2008

Two RNA polymerase I subunits control the binding and release of Rrn3 during transcription.

Frédéric Beckouet, Sylvie Labarre-Mariotte, Benjamin Albert, Yukiko Imazawa, Michel Werner, Olivier Gadal, Yasuhisa Nogi, Pierre Thuriaux

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 89 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Frédéric BeckouetCEA, IbiTec-S, Service de Biologie Intégrative & Génétique Moléculaire, Gif sur Yvette Cedex F-91191, France.
Sylvie Labarre-Mariotte
Benjamin Albert
Yukiko Imazawa
Michel Werner
Olivier Gadal
Yasuhisa Nogi
Pierre Thuriaux
Institut de Biologie et Technologies · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRSaitama Medical University · JPLaboratoire Dynamique de la Biodiversité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rpa34 and Rpa49 are nonessential subunits of RNA polymerase I, conserved in species from Saccharomyces cerevisiae and Schizosaccharomyces pombe to humans. Rpa34 bound an N-terminal region of Rpa49 in a two-hybrid assay and was lost from RNA polymerase in an rpa49 mutant lacking this Rpa34-binding domain, whereas rpa34Delta weakened the binding of Rpa49 to RNA polymerase. rpa34Delta mutants were caffeine sensitive, and the rpa34Delta mutation was lethal in a top1Delta mutant and in rpa14Delta, rpa135(L656P), and rpa135(D395N) RNA polymerase mutants. These defects were shared by rpa49Delta mutants, were suppressed by the overexpression of Rpa49, and thus, were presumably mediated by Rpa49 itself. rpa49 mutants lacking the Rpa34-binding domain behaved essentially like rpa34Delta mutants, but strains carrying rpa49Delta and rpa49-338::HIS3 (encoding a form of Rpa49 lacking the conserved C terminus) had reduced polymerase occupancy at 30 degrees C, failed to grow at 25 degrees C, and were sensitive to 6-azauracil and mycophenolate. Mycophenolate almost fully dissociated the mutant polymerase from its ribosomal DNA (rDNA) template. The rpa49Delta and rpa49-338::HIS3 mutations had a dual effect on the transcription initiation factor Rrn3 (TIF-IA). They partially impaired its recruitment to the rDNA promoter, an effect that was bypassed by an N-terminal deletion of the Rpa43 subunit encoded by rpa43-35,326, and they strongly reduced the release of the Rrn3 initiation factor during elongation. These data suggest a dual role of the Rpa49-Rpa34 dimer during the recruitment of Rrn3 and its subsequent dissociation from the elongating polymerase.

Indexed as

Transcription, GeneticAmino Acid SequenceChromatin ImmunoprecipitationDimerizationEnzyme InhibitorsModels, MolecularMolecular Sequence DataMutationMycophenolic AcidPlasmidsPol1 Transcription Initiation Complex ProteinsProtein BindingProtein SubunitsRNA Polymerase ISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsEnzyme InhibitorsMycophenolic AcidPol1 Transcription Initiation Complex ProteinsProtein SubunitsRNA Polymerase IRRN3 protein, S cerevisiaeRrn3 protein, S pombeSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsTranscription Factors

Identifiers

PMID18086878
PMCPMC2258765
OpenAlexW2105099275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.