Evidence map›Paper›PMID 18083815›Full record

ArticleJournal of bacteriology2008

Characterization of the SOS regulon of Caulobacter crescentus.

Raquel Paes da Rocha, Apuã César de Miranda Paquola, Marilis do Valle Marques, Carlos Frederico Martins Menck, Rodrigo S Galhardo

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 71 citations in OpenAlex.

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  5. Proteomic survey of the DNA damage response inJournal of bacteriology · 2023
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  6. Proteomic survey of the DNA damage response inbioRxiv : the preprint server for biology · 2023
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  8. ssDNA is an allosteric regulator of theGenes & development · 2022
    Article
  9. Sending out an SOS - the bacterial DNA damage response.Genetics and molecular biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Raquel Paes da RochaDepartment of Microbiology, Institute of Biomedical Sciences, São Paulo University, São Paulo, Brazil.
Apuã César de Miranda Paquola
Marilis do Valle Marques
Carlos Frederico Martins Menck
Rodrigo S Galhardo
Universidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SOS regulon is a paradigm of bacterial responses to DNA damage. A wide variety of bacterial species possess homologs of lexA and recA, the central players in the regulation of the SOS circuit. Nevertheless, the genes actually regulated by the SOS have been determined only experimentally in a few bacterial species. In this work, we describe 37 genes regulated in a LexA-dependent manner in the alphaproteobacterium Caulobacter crescentus. In agreement with previous results, we have found that the direct repeat GTTCN7GTTC is the SOS operator of C. crescentus, which was confirmed by site-directed mutagenesis studies of the imuA promoter. Several potential promoter regions containing the SOS operator were identified in the genome, and the expression of the corresponding genes was analyzed for both the wild type and the lexA strain, demonstrating that the vast majority of these genes are indeed SOS regulated. Interestingly, many of these genes encode proteins with unknown functions, revealing the potential of this approach for the discovery of novel genes involved in cellular responses to DNA damage in prokaryotes, and illustrating the diversity of SOS-regulated genes among different bacterial species.

Indexed as

Bacterial ProteinsBase SequenceBinding SitesCaulobacter crescentusDNA DamageGene Expression ProfilingGene Expression Regulation, BacterialLexA Repressor ProteinMolecular Sequence DataMutagenesis, Site-DirectedNucleic Acid Amplification TechniquesOperator Regions, GeneticPhenotypePromoter Regions, GeneticRegulonReverse Transcriptase Polymerase Chain ReactionBacterial ProteinsLexA Repressor ProteinSerine Endopeptidases

Identifiers

PMID18083815
PMCPMC2238201
OpenAlexW2065367823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.