Evidence map›Paper›PMID 18083106›Full record

ArticleCell2007

cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans.

Craig T Miller, Sandra Beleza, Alex A Pollen, Dolph Schluter, Rick A Kittles, Mark D Shriver, David M Kingsley

Abstract read
In one paragraph

Article in Cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 189 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
189citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

189 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Evolution letters · 2025
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129 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Craig T MillerHHMI and Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Sandra Beleza
Alex A Pollen
Dolph Schluter
Rick A Kittles
Mark D Shriver
David M Kingsley

Funding

Genomic Basis of Vertebrate DiversityP50HG002568 · NHGRI · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 2002 to 2011
$29.2M
CONSTRUCTION AND APPLICATION OF A US ADMIXTURE MAPR01HG002154 · NHGRI · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI SHRIVER, MARK D · 1999 to 2006
$1.7M
Howard Hughes Medical InstituteNHGRI NIH HHS P50 HG002568NHGRI NIH HHS R01 HG002154
6 · The paper itself

Abstract

Dramatic pigmentation changes have evolved within most vertebrate groups, including fish and humans. Here we use genetic crosses in sticklebacks to investigate the parallel origin of pigmentation changes in natural populations. High-resolution mapping and expression experiments show that light gills and light ventrums map to a divergent regulatory allele of the Kit ligand (Kitlg) gene. The divergent allele reduces expression in gill and skin tissue and is shared by multiple derived freshwater populations with reduced pigmentation. In humans, Europeans and East Asians also share derived alleles at the KITLG locus. Strong signatures of selection map to regulatory regions surrounding the gene, and admixture mapping shows that the KITLG genomic region has a significant effect on human skin color. These experiments suggest that regulatory changes in Kitlg contribute to natural variation in vertebrate pigmentation, and that similar genetic mechanisms may underlie rapid evolutionary change in fish and humans.

Indexed as

AnimalsBase SequenceChromosome MappingCrosses, GeneticEvolution, MolecularGene Expression RegulationGenetic VariationGillsHumansMelanocytesMolecular Sequence DataMutationQuantitative Trait LociRegulatory Sequences, Nucleic AcidSkin PigmentationSmegmamorphaStem Cell Factor

Identifiers

PMID18083106
PMCPMC2900316

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.