Evidence map›Paper›PMID 18077715›Full record

ArticleJournal of virology2008

A repetitive region of gammaherpesvirus genomic DNA is a ligand for induction of type I interferon.

David Jesse Sanchez, Daniel Miranda, Vaithilingaraja Arumugaswami, Seungmin Hwang, Adam E Singer, Ashkon Senaati, Arash Shahangian, Moon Jung Song, Ren Sun, Genhong Cheng

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Modulation of the cGAS-STING DNA sensing pathway by gammaherpesviruses.Proceedings of the National Academy of Sciences of the United States of America · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

David Jesse SanchezDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Daniel Miranda
Vaithilingaraja Arumugaswami
Seungmin Hwang
Adam E Singer
Ashkon Senaati
Arash Shahangian
Moon Jung Song
Ren Sun
Genhong Cheng
University of California, Los Angeles · USBlack AIDS Institute · USKorea University · KRUniversity of California, Berkeley · US

Funding

TUMOR CELL SURFACES AND CHROMOSOMEST32CA009056 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gay M Crooks, David A. Nathanson · 1985 to 2026
$10.5M
Viral Mediated Type I Interferon InductionR01AI069120 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHENG, GENHONG · 2006 to 2021
$6.0M
CLINICAL AND FUNDAMENTAL IMMUNOLOGYT32AI007126 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SAXON, ANDREW · 1985 to 2006
$1.5M
NCI NIH HHS 5 T32 CA009056-29NCI NIH HHS T32 CA009056NIAID NIH HHS 5T32AI007126-30NIAID NIH HHS R01 AI069120NIAID NIH HHS R0I-AI069120NIAID NIH HHS T32 AI007126
6 · The paper itself

Abstract

Innate immune responses against viral infection, especially the induction of type I interferon, are critical for limiting the replication of the virus. Although it has been shown that DNA can induce type I interferon, to date no natural DNA ligand of a virus that induces type I interferon has been described. Here we screened the genome of murine gammaherpesvirus 68 with mutations at various genomic locations to map the region of DNA that induces type I interferon. A repetitive region termed the 100-base-pair repeat region is a ligand that is both necessary and sufficient for the viral genomic DNA to induce type I interferon. A region colinear with this ligand in the genome of Kaposi's sarcoma-associated herpesvirus also induces type I interferon. We have thus defined a repetitive region of the genomes of gammaherpesviruses as the first natural DNA virus ligand that induces type I interferon.

Indexed as

AnimalsBase SequenceCells, CulturedChromosomes, Artificial, BacterialDNA PrimersDNA, ViralGammaherpesvirinaeHumansInterferon Type ILigandsMiceMutationDNA PrimersDNA, ViralInterferon Type ILigands

Identifiers

PMID18077715
PMCPMC2258961
OpenAlexW2074017473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.