Evidence map›Paper›PMID 18077639›Full record

ArticleJournal of clinical microbiology2008

Early infant human immunodeficiency virus type 1 detection suitable for resource-limited settings with multiple circulating subtypes by use of nested three-monoplex DNA PCR and dried blood spots.

Qi Zhang, Linhong Wang, Yan Jiang, Liwen Fang, Pinliang Pan, Shuangyan Gong, Jun Yao, Yi-Wei Tang, Sten H Vermund, Yujiang Jia

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Diagnosis of HIV-1 infection in infants using dried blood spots in Tamil Nadu, South India.Indian journal of sexually transmitted diseases and AIDS · 2011
    Article
  7. Quality assurance in the HIV/AIDS laboratory network of China.International journal of epidemiology · 2010
    Article
  8. Clinical evaluation of a dried blood spot assay for atazanavir.Antimicrobial agents and chemotherapy · 2010
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Overseas processing of dried blood spots for timely diagnosis of HIV in Haitian infants.Revista panamericana de salud publica = Pan American journal of public health · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Qi ZhangNational Center for Women and Children's Health, China Center for Disease Control and Prevention, Beijing 100013, People's Republic of China.
Linhong Wang
Yan Jiang
Liwen Fang
Pinliang Pan
Shuangyan Gong
Jun Yao
Yi-Wei Tang
Sten H Vermund
Yujiang Jia
Centers for Disease Control and Prevention · USNational Center for AIDS/STD Control and Prevention,China CDC · CNVanderbilt University · US

Funding

Vanderbilt University-CIDRZ AIDS International Training and Research ProgramD43TW001035 · FIC · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 1998 to 2014
$10.9M
VIROLOGY COREP30AI054999 · NIAID · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 2003 to 2011
$10.3M
Measuring Incident Human Immonodeficiency Virus (HIV-1) Infections in ChinaR03AI073134 · NIAID · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 2007 to 2008
$125k
Estimation Models for HIV/AIDS in ChinaR03AI067349 · NIAID · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 2005 to 2006
$125k
FIC NIH HHS D43 TW001035FIC NIH HHS D43 TW001035-09NIAID NIH HHS P30 AI054999NIAID NIH HHS P30 AI 54999NIAID NIH HHS R03 AI067349NIAID NIH HHS R03 AI073134
6 · The paper itself

Abstract

The early detection of human immunodeficiency virus type 1 (HIV-1) infection in infants is complicated by the persistence of maternal antibodies and by diverse HIV-1 subtypes. We developed a nested, three-monoplex HIV-1 DNA PCR (N3M-PCR) assay to detect diverse HIV-1 subtypes in infants born to infected mothers. We optimized the test for use with dried blood spot (DBS) samples for ease of storage and transport from rural China to central laboratories. Six pairs of primers were designed that targeted env, gag, and pol genes, and the test was run in three reactions with an analytical sensitivity of 10 copies DNA per reaction to cover nine HIV-1 subtypes, A, B, C, D, F, G, CRF01-AE, CRF08-BC, and CRF07-BC. The assay performance was evaluated on 347 DBS specimens from 151 exposed infants in four diverse provinces of China in which multiple subtypes were circulating. The results of this test were compared to those of HIV antibody enzyme immunoassay and Western blotting confirmation for the infants at > or =18 months of age or to convincing clinical and epidemiologic data for deceased infants. The sensitivity of the N3M-PCR assay was 30.0% (3/10) for infants at 48 h after birth, 91.7% (11/12) at 1 to 2 months of age, and 93.7% (15/16) at 3 to 6 months of age. The specificity was 100% (94/94) at all three time points. The PCR reproducibility in the three DNA regions was 100% for samples at 48 h after birth, 96.7% at 1 to 2 months, and 100% at 3 to 6 months of age. The HIV-1 DNA N3M-PCR assay on DBSs offers a simple and affordable approach for early infant HIV-1 diagnosis in regions with diverse HIV-1 circulating subtypes.

Indexed as

Age FactorsBloodBlotting, WesternChinaDNA PrimersDNA, Viralenv Gene Products, Human Immunodeficiency Virusgag Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesHIV InfectionsHumansInfantInfant, Newbornpol Gene Products, Human Immunodeficiency VirusPolymerase Chain ReactionDNA PrimersDNA, Viralenv Gene Products, Human Immunodeficiency Virusgag Gene Products, Human Immunodeficiency VirusHIV Antibodiespol Gene Products, Human Immunodeficiency Virus

Identifiers

PMID18077639
PMCPMC2238144
OpenAlexW1993863911

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.