Evidence map›Paper›PMID 18070921›Full record

ArticleMolecular and cellular biology2008

Yap5 is an iron-responsive transcriptional activator that regulates vacuolar iron storage in yeast.

Liangtao Li, Dustin Bagley, Diane M Ward, Jerry Kaplan

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 120 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Essential Role ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Fungal-Metal Interactions: A Review of Toxicity and Homeostasis.Journal of fungi (Basel, Switzerland) · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. The mitochondrial iron exporter genesThe Journal of biological chemistry · 2020
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Liangtao LiDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84132, USA.
Dustin Bagley
Diane M Ward
Jerry Kaplan
University of Utah · US

Funding

FACTORS REGULATING THE CELLULAR UPTAKE OF IRONR37DK030534 · NIDDK · UNIVERSITY OF UTAH · PI KAPLAN, JERRY · 2000 to 2009
$3.3M
FACTORS REGULATING THE CELLULAR UPTAKE OF IRONR01DK030534 · NIDDK · UNIVERSITY OF UTAH · PI WARD, DIANE MCVEY · 1986 to 2018
$2.7M
NIDDK NIH HHS DK30534NIDDK NIH HHS R01 DK030534NIDDK NIH HHS R37 DK030534
6 · The paper itself

Abstract

The transporter Ccc1 imports iron into the vacuole, which is the major site of iron storage in fungi and plants. CCC1 mRNA is destabilized under low-iron conditions by the binding of Cth1 and Cth2 to the 3' untranslated region (S. Puig, E. Askeland, and D. J. Thiele, Cell 120:99-110, 2005). Here, we show that the transcription of CCC1 is stimulated by iron through a Yap consensus site in the CCC1 promoter. We identified YAP5 as being the iron-sensitive transcription factor and show that a yap5Delta strain is sensitive to high iron. Green fluorescent protein-tagged Yap5 is localized to the nucleus and occupies the CCC1 promoter independent of the iron concentration. Yap5 contains two cysteine-rich domains, and the mutation of the cysteines to alanines in each of the domains affects the transcription of CCC1 but not DNA binding. The fusion of the Yap5 cysteine-containing domains to a GAL4 DNA binding domain results in iron-sensitive GAL1-lacZ expression. Iron affects the sulfhydryl status of Yap5, which is indicative of the generation of intramolecular disulfide bonds. These results show that Yap5 is an iron-sensing transcription factor and that iron regulates transcriptional activation.

Indexed as

Basic-Leucine Zipper Transcription FactorsCation Transport ProteinsCell NucleusCysteineEpitopesGene Expression Regulation, FungalGenes, ReporterIronLac OperonPromoter Regions, GeneticProtein BindingProtein Structure, TertiaryProtein TransportRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsBasic-Leucine Zipper Transcription FactorsCation Transport ProteinsCCC1 protein, S cerevisiaeCysteineEpitopesIronRNA, MessengerSaccharomyces cerevisiae ProteinsTrans-ActivatorsYap5 protein, S cerevisiae

Identifiers

PMID18070921
PMCPMC2258748
OpenAlexW2106855898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.