Evidence map›Paper›PMID 18066601›Full record

ArticleHuman genetics2008

Fine mapping of familial prostate cancer families narrows the interval for a susceptibility locus on chromosome 22q12.3 to 1.36 Mb.

Bo Johanneson, Shannon K McDonnell, Danielle M Karyadi, Scott J Hebbring, Liang Wang, Kerry Deutsch, Laura McIntosh, Erika M Kwon, Miia Suuriniemi, Janet L Stanford and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Genetic variants and prostate cancer risk: candidate replication and exploration of viral restriction genes.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2009
    Article
  7. Article
  8. The role of the BRCA2 gene in susceptibility to prostate cancer revisited.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Bo JohannesonCancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Shannon K McDonnell
Danielle M Karyadi
Scott J Hebbring
Liang Wang
Kerry Deutsch
Laura McIntosh
Erika M Kwon
Miia Suuriniemi
Janet L Stanford
Daniel J Schaid
Elaine A Ostrander
Stephen N Thibodeau
Cancer Genetics (United States) · USMayo Clinic · USMayo Clinic in Florida · USNational Institutes of Health · USFred Hutch Cancer Center · USInstitute for Systems Biology · USUniversity of Washington · US

Funding

Finding Genes for Human Prostate CancerZIAHG200325 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI OSTRANDER, ELAINE · 2009 to 2021
$17.7M
GENETIC EPIDEMIOLOGY OF PROSTATE CANCERR01CA080122 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STANFORD, JANET L · 1999 to 2008
$3.8M
GENETICS OF PROSTATE CANCER SUSCEPTIBILITYR01CA078836 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NELSON, PETER S · 1999 to 2005
$3.3M
LOCALIZATION OF SUSCEPTIBILITY LOCI IN PROSTATE CANCERR01CA072818 · NCI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI THIBODEAU, STEPHEN NORMAN · 1997 to 2005
$1.9M
NCI NIH HHS R01 CA089600NCI NIH HHS R01 CA72818NCI NIH HHS R01 CA78836NCI NIH HHS R01 CA80122
6 · The paper itself

Abstract

Genetic studies suggest that hereditary prostate cancer is a genetically heterogeneous disease with multiple contributing loci. Studies of high-risk prostate cancer families selected for aggressive disease, analysis of large multigenerational families, and a meta-analysis from the International Consortium for Prostate Cancer Genetics (ICPCG), all highlight chromosome 22q12.3 as a susceptibility locus with strong statistical significance. Recently, two publications have narrowed the 22q12.3 locus to a 2.18 Mb interval using 54 high-risk families from the ICPCG collaboration, as defined by three recombination events on either side of the locus. In this paper, we present the results from fine mapping studies at 22q12.3 using both haplotype and recombination data from 42 high-risk families contributed from the Mayo Clinic and the Prostate Cancer Genetic Research Study (PROGRESS) mapping studies. No clear consensus interval is present when all families are used. However, in the subset of 14 families with >/=5 affected men per family, a 2.53-Mb shared consensus segment that overlaps with the previously published interval is identified. Combining these results with data from the earlier ICPCG study reduces the three-recombination interval at 22q12.3 to approximately 1.36 Mb.

Indexed as

Chromosomes, Human, Pair 22Genetic Predisposition to DiseaseHumansLod ScoreMalePedigreeProstatic Neoplasms

Identifiers

PMID18066601
OpenAlexW1999696521

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.