Evidence map›Paper›PMID 18065716›Full record

ArticleRNA (New York, N.Y.)2008

KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei.

Salvador Zipagan Tarun, Achim Schnaufer, Nancy Lewis Ernst, Rosemary Proff, Junpeng Deng, Wim Hol, Kenneth Stuart

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The Architecture of Trypanosoma brucei editosomes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Inhibitors of RNA editing as potential chemotherapeutics against trypanosomatid pathogens.International journal for parasitology. Drugs and drug resistance · 2012
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Salvador Zipagan TarunSeattle Biomedical Research Institute, Seattle, Washington 98109, USA
Achim Schnaufer
Nancy Lewis Ernst
Rosemary Proff
Junpeng Deng
Wim Hol
Kenneth Stuart
Center for Infectious Disease Research · USUniversity of Washington · US

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
RNA Editing ComplexR01GM042188 · NIGMS · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1989 to 2006
$3.4M
Structure-Function Relationships in Kinetoplastid RNA-EditingR01GM077418 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2009
$2.1M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR37AI014102 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1992 to 2001
$971k
Editosome Protein-RNA Interactions in TrypanosomesF32AI068303 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI TARUN, SALVADOR Z. · 2006 to 2008
$151k
NIAID NIH HHS AI014102NIAID NIH HHS F32 AI068303NIAID NIH HHS F-32 AI68303NIAID NIH HHS R01 AI014102NIAID NIH HHS R37 AI014102NIGMS NIH HHS GM042188NIGMS NIH HHS GM077418NIGMS NIH HHS R01 GM042188NIGMS NIH HHS R01 GM077418
6 · The paper itself

Abstract

Most mitochondrial mRNAs in kinetoplastid protozoa require post-transcriptional RNA editing that inserts and deletes uridylates, a process that is catalyzed by multiprotein editosomes. KREPA6 is the smallest of six editosome proteins that have predicted oligonucleotide-binding (OB) folds. Inactivation of KREPA6 expression results in disruption and ultimate loss of approximately 20S editosomes and inhibition of procyclic form cell growth. Gel shift studies show that recombinant KREPA6 binds RNA, but not DNA, with a preference for oligo-(U) whether on the 3' end of gRNA or as a (UU)(12) homopolymer. Thus, KREPA6 is essential for the structural integrity and presence of approximately 20S editosomes and for cell viability. It functions in RNA binding perhaps primarily through the gRNA 3' oligo(U) tail. The significance of these findings to key steps in editing is discussed.

Indexed as

RNA EditingAnimalsCell SurvivalProtozoan ProteinsRecombinant ProteinsRNA-Binding ProteinsRNA InterferenceRNA, ProtozoanTrypanosoma brucei bruceiProtozoan ProteinsRecombinant ProteinsRNA-Binding ProteinsRNA, Protozoan

Identifiers

PMID18065716
PMCPMC2212256
OpenAlexW2135534435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.