Evidence map›Paper›PMID 18065561›Full record

ArticlePlant physiology2008

Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants.

Dayakar V Badri, Victor M Loyola-Vargas, Corey D Broeckling, Clelia De-la-Peña, Michal Jasinski, Diana Santelia, Enrico Martinoia, Lloyd W Sumner, Lois M Banta, Frank Stermitz and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 186 citations in OpenAlex.

  1. Article
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  14. Changes in microbial communities during phytoremediation of contaminated soil with phenanthrene.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  15. International journal of molecular sciences · 2020
    Review
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Dayakar V BadriCenter for Rhizosphere Biology, Colorado State University, Fort Collins, Colorado 80523, USA.
Victor M Loyola-Vargas
Corey D Broeckling
Clelia De-la-Peña
Michal Jasinski
Diana Santelia
Enrico Martinoia
Lloyd W Sumner
Lois M Banta
Frank Stermitz
Jorge M Vivanco
Colorado State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Following recent indirect evidence suggesting a role for ATP-binding cassette (ABC) transporters in root exudation of phytochemicals, we identified 25 ABC transporter genes highly expressed in the root cells most likely to be involved in secretion processes. Of these 25 genes, we also selected six full-length ABC transporters and a half-size transporter for in-depth molecular and biochemical analyses. We compared the exuded root phytochemical profiles of these seven ABC transporter mutants to those of the wild type. There were three nonpolar phytochemicals missing in various ABC transporter mutants compared to the wild type when the samples were analyzed by high-performance liquid chromatography-mass spectrometry. These data suggest that more than one ABC transporter can be involved in the secretion of a given phytochemical and that a transporter can be involved in the secretion of more than one secondary metabolite. The primary and secondary metabolites present in the root exudates of the mutants were also analyzed by gas chromatography-mass spectrometry, which allowed for the identification of groups of compounds differentially found in some of the mutants compared to the wild type. For instance, the mutant Atpdr6 secreted a lower level of organic acids and Atmrp2 secreted a higher level of amino acids as compared to the wild type. We conclude that the release of phytochemicals by roots is partially controlled by ABC transporters.

Indexed as

ArabidopsisATP-Binding Cassette TransportersChromatography, High Pressure LiquidDNA, BacterialGas Chromatography-Mass SpectrometryGene DeletionGene Expression Regulation, PlantMutationPlant RootsATP-Binding Cassette TransportersDNA, BacterialT-DNA

Identifiers

PMID18065561
PMCPMC2245854
OpenAlexW2014223912

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.