Evidence map›Paper›PMID 18065551›Full record

ArticleJournal of bacteriology2008

Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap.

Xianxian Liu, Rebecca E Parales

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Response ofMicrobiology spectrum · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. RNase I ModulatesACS chemical biology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Escape band inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Sensory Repertoire of Bacterial Chemoreceptors.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Bacterial chemoreceptors and chemoeffectors.Cellular and molecular life sciences : CMLS · 2015
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Bacterial chemotaxis to atrazine and related s-triazines.Applied and environmental microbiology · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Xianxian LiuSection of Microbiology, University of California, Davis, California 95616, USA.
Rebecca E Parales

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli exhibits chemotactic responses to sugars, amino acids, and dipeptides, and the responses are mediated by methyl-accepting chemotaxis proteins (MCPs). Using capillary assays, we demonstrated that Escherichia coli RP437 is attracted to the pyrimidines thymine and uracil and the response was constitutively expressed under all tested growth conditions. All MCP mutants lacking the MCP Tap protein showed no response to pyrimidines, suggesting that Tap, which is known to mediate dipeptide chemotaxis, is required for pyrimidine chemotaxis. In order to confirm the role of Tap in pyrimidine chemotaxis, we constructed chimeric chemoreceptors (Tapsr and Tsrap), in which the periplasmic and cytoplasmic domains of Tap and Tsr were switched. When Tapsr and Tsrap were individually expressed in an E. coli strain lacking all four native MCPs, Tapsr mediated chemotaxis toward pyrimidines and dipeptides, but Tsrap did not complement the chemotaxis defect. The addition of the C-terminal 19 amino acids from Tsr to the C terminus of Tsrap resulted in a functional chemoreceptor that mediated chemotaxis to serine but not pyrimidines or dipeptides. These results indicate that the periplasmic domain of Tap is responsible for detecting pyrimidines and the Tsr signaling domain confers on Tapsr the ability to mediate efficient chemotaxis. A mutant lacking dipeptide binding protein (DBP) was wild type for pyrimidine taxis, indicating that DBP, which is the primary chemoreceptor for dipeptides, is not responsible for detecting pyrimidines. It is not yet known whether Tap detects pyrimidines directly or via an additional chemoreceptor protein.

Indexed as

Gene Expression Regulation, BacterialSignal TransductionChemotaxisEscherichia coliEscherichia coli ProteinsPyrimidinesReceptors, Cell SurfaceThymineUracilEscherichia coli ProteinsPyrimidinesReceptors, Cell SurfaceTap protein, E coliThymineUracil

Identifiers

PMID18065551
PMCPMC2223585

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.