Evidence map›Paper›PMID 18065541›Full record

ArticleJournal of bacteriology2008

Analysis of genetic relatedness of Haemophilus influenzae isolates by multilocus sequence typing.

Alice L Erwin, Sara A Sandstedt, Paul J Bonthuis, Jennifer L Geelhood, Kevin L Nelson, William C T Unrath, Mathew A Diggle, Mary J Theodore, Cynthia R Pleatman, Elizabeth A Mothershed and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  4. Molecular epidemiology of invasive Haemophilus influenzae disease in Portugal: an update of the post-vaccine period, 2011-2018.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
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  19. Vaccines for Nontypeable Haemophilus influenzae: the Future Is Now.Clinical and vaccine immunology : CVI · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Alice L ErwinMicrobial Pathogens Program, Seattle Biomedical Research Institute, Seattle, Washington, USA. alice_erwin@vrtx.com
Sara A Sandstedt
Paul J Bonthuis
Jennifer L Geelhood
Kevin L Nelson
William C T Unrath
Mathew A Diggle
Mary J Theodore
Cynthia R Pleatman
Elizabeth A Mothershed
Claudio T Sacchi
Leonard W Mayer
Janet R Gilsdorf
Arnold L Smith
Center for Infectious Disease Research · USNational Center for Infectious Diseases · USUniversity of Michigan–Ann Arbor · USStobhill Hospital · GB

Funding

H. influenzae Genes Associated with Acute Otitis MediaR01DC005840 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GILSDORF, JANET R · 2002 to 2010
$3.6M
INVASIVE NONCAPSULATED H. INFLUENZAER01AI044002 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SMITH, ARNOLD LEE · 2000 to 2004
$1.6M
H. influenzae genes associated with COPDR01HL083893 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GILSDORF, JANET R · 2006 to 2009
$1.5M
Virulence genes Haemophilus influenzaeR01AI046512 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SMITH, ARNOLD LEE · 2002 to 2004
$816k
NHLBI NIH HHS HL 083893NHLBI NIH HHS R01 HL083893NIAID NIH HHS AI 44002NIAID NIH HHS AI 46512NIAID NIH HHS R01 AI044002NIAID NIH HHS R01 AI046512NIDCD NIH HHS DC 05840NIDCD NIH HHS R01 DC005840Wellcome Trust
6 · The paper itself

Abstract

The gram-negative bacterium Haemophilus influenzae is a human-restricted commensal of the nasopharynx that can also be associated with disease. The majority of H. influenzae respiratory isolates lack the genes for capsule production and are nontypeable (NTHI). Whereas encapsulated strains are known to belong to serotype-specific phylogenetic groups, the structure of the NTHI population has not been previously described. A total of 656 H. influenzae strains, including 322 NTHI strains, have been typed by multilocus sequence typing and found to have 359 sequence types (ST). We performed maximum-parsimony analysis of the 359 sequences and calculated the majority-rule consensus of 4,545 resulting equally most parsimonious trees. Eleven clades were identified, consisting of six or more ST on a branch that was present in 100% of trees. Two additional clades were defined by branches present in 91% and 82% of trees, respectively. Of these 13 clades, 8 consisted predominantly of NTHI strains, three were serotype specific, and 2 contained distinct NTHI-specific and serotype-specific clusters of strains. Sixty percent of NTHI strains have ST within one of the 13 clades, and eBURST analysis identified an additional phylogenetic group that contained 20% of NTHI strains. There was concordant clustering of certain metabolic reactions and putative virulence loci but not of disease source or geographic origin. We conclude that well-defined phylogenetic groups of NTHI strains exist and that these groups differ in genetic content. These observations will provide a framework for further study of the effect of genetic diversity on the interaction of NTHI with the host.

Indexed as

PhylogenyAlgorithmsBacterial Typing TechniquesHaemophilus influenzaeMolecular Sequence DataPolymerase Chain ReactionRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID18065541
PMCPMC2238191
OpenAlexW2102210144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.