Evidence map›Paper›PMID 18064538›Full record

ArticleTransgenic research2008

A high-throughput Agrobacterium-mediated transformation system for the grass model species Brachypodium distachyon L.

Daniel Ioan Păcurar, Hans Thordal-Christensen, Klaus Kristian Nielsen, Ingo Lenk

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Transgenic research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 58 citations in OpenAlex.

  1. ImprovingGenes · 2023
    Article
  2. Article
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  4. Article
  5. In Vitro Tissue Culture inInternational journal of molecular sciences · 2020
    Review
  6. A CRISPR/Cas9-Based Mutagenesis Protocol forFrontiers in plant science · 2020
    Article
  7. An Efficient System forPlant physiology · 2019
    Article
  8. The Plant cell · 2018
    Review
  9. Article
  10. Article
  11. A simple and highly efficientBiotechnology reports (Amsterdam, Netherlands) · 2015
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Daniel Ioan PăcurarUniversity of Agricultural Sciences and Veterinary Medicine, Mănăştur Street 3-5, Cluj Napoca, 400372, Romania.
Hans Thordal-Christensen
Klaus Kristian Nielsen
Ingo Lenk
DLF Trifolium (Denmark) · DKUniversity of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca · ROUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the ongoing process of developing Brachypodium distachyon as a model plant for temperate cereals and forage grasses, we have developed a high-throughput Agrobacterium-mediated transformation system for a diploid accession. Embryogenic callus, derived from immature embryos of the accession BDR018, were transformed with Agrobacterium tumefaciens strain AGL1 carrying two T-DNA plasmids, pDM805 and pWBV-Ds-Ubi-bar-Ds. Transient and stable transformation efficiencies were optimised by varying the pre-cultivation period, which had a strong effect on stable transformation efficiency. On average 55% of 17-day-old calli co-inoculated with Agrobacterium regenerated stable transgenic plants. Stable transformation frequencies of up to 80%, which to our knowledge is the highest transformation efficiency reported in graminaceous species, were observed. In a study of 177 transgenic lines transformed with pDM805, all of the regenerated transgenic lines were resistant to BASTA, while the gusA gene was expressed in 88% of the transgenic lines. Southern blot analysis revealed that 35% of the tested plants had a single T-DNA integration. Segregation analysis performed on progenies of ten selected T(0) plants indicated simple Mendelian inheritance of the two transgenes. Furthermore, the presence of two selection marker genes, bar and hpt, on the T-DNA of pWBV-Ds-Ubi-bar-Ds allowed us to characterize the developed transformation protocol with respect to full-length integration rate. Even when not selected for, full-length integration occurred in 97% of the transformants when using bialaphos as selection agent.

Indexed as

Models, GeneticTransformation, GeneticBlotting, SouthernGenes, PlantPoaceaeRhizobiumTransgenes

Identifiers

PMID18064538
OpenAlexW2066520111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.