Evidence map›Paper›PMID 18060573›Full record

ArticleMolecular diversity

Evidence for positive Darwinian selection on the hepcidin gene of Perciform and Pleuronectiform fishes.

Abinash Padhi, Bindhu Verghese

Abstract read
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In one paragraph

Article in Molecular diversity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. The Diverse Piscidin Repertoire of the European Sea Bass (International journal of molecular sciences · 2020
    Article
  7. An improved genome assembly forCommunications biology · 2018
    Article
  8. Article
  9. Review
  10. Article
  11. Antimicrobial peptides from fish.Pharmaceuticals (Basel, Switzerland) · 2014
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Abinash PadhiDepartment of Biological Science, University of Tulsa, 600 S. College Avenue, Tulsa, OK 74104, USA. abinash@utulsa.edu
Bindhu Verghese
Pennsylvania State University · USUniversity of Tulsa · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepcidin is a small cysteine-rich peptide that plays an important role in antimicrobial activity and in maintaining iron homeostasis in vertebrates. Here we report on the underlying mechanism that maintains high sequence diversities among the hepcidin-like variants of perciform and pleuronectiform fishes. In contrast to mammals, maximum likelihood-based codon substitution analyses revealed that positive Darwinian selection (nonsynonymous to synonymous substitution, omega > 1) is the likely cause of accelerated rate of amino acid substitutions in the hepcidin mature peptide region of these fishes. Comparison of models incorporating positive selection (omega > 1) at certain sites with models not incorporating positive selection (omega < 1) failed to reject (p = 0) the evidence of positive selection among the codon sites of percifom and pleuronectiform hepcidin. The adaptive evolution of this peptide in perciform and pleuronectiform fishes might be directed by pathogens when the host is exposed to new habitats/environments.

Indexed as

Evolution, MolecularSelection, GeneticAmino Acid SequenceAnimalsAntimicrobial Cationic PeptidesCodonFish ProteinsFlatfishesHepcidinsLikelihood FunctionsModels, GeneticModels, MolecularMolecular Sequence DataPerciformesPhylogenyProtein ConformationAntimicrobial Cationic PeptidesCodonFish ProteinsHepcidins

Identifiers

PMID18060573
OpenAlexW2051823803

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.