Evidence map›Paper›PMID 18059263›Full record

ArticleNature chemical biology2008

Molecular basis of cyclin-CDK-CKI regulation by reversible binding of an inositol pyrophosphate.

Young-Sam Lee, Kexin Huang, Florante A Quiocho, Erin K O'Shea

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 163 citations in OpenAlex.

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  15. A transcriptional activator fromFrontiers in microbiology · 2022
    Article
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Young-Sam LeeHoward Hughes Medical Institute, Harvard University, Department of Molecular and Cellular Biology, Faculty of Arts and Sciences Center for Systems Biology, 7 Divinity Avenue, Cambridge, Massachusetts 02138, USA.
Kexin Huang
Florante A Quiocho
Erin K O'Shea
Baylor College of Medicine · USHoward Hughes Medical Institute · US

Funding

REGULATION OF YEAST PHO5 GENER01GM051377 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI O'SHEA, ERIN K. · 1994 to 2011
$3.7M
NIGMS NIH HHS R01 GM051377
6 · The paper itself

Abstract

When Saccharomyces cerevisiae cells are starved of inorganic phosphate, the Pho80-Pho85 cyclin-cyclin-dependent kinase (CDK) is inactivated by the Pho81 CDK inhibitor (CKI). The regulation of Pho80-Pho85 is distinct from previously characterized mechanisms of CDK regulation: the Pho81 CKI is constitutively associated with Pho80-Pho85, and a small-molecule ligand, inositol heptakisphosphate (IP7), is required for kinase inactivation. We investigated the molecular basis of the IP7- and Pho81-dependent Pho80-Pho85 inactivation using electrophoretic mobility shift assays, enzyme kinetics and fluorescence spectroscopy. We found that IP7 interacts noncovalently with Pho80-Pho85-Pho81 and induces additional interactions between Pho81 and Pho80-Pho85 that prevent substrates from accessing the kinase active site. Using synthetic peptides corresponding to Pho81, we define regions of Pho81 responsible for constitutive Pho80-Pho85 binding and IP7-regulated interaction and inhibition. These findings expand our understanding of the mechanisms of cyclin-CDK regulation and of the biochemical mechanisms of IP7 action.

Indexed as

Inositol PhosphatesCyclin-Dependent KinasesCyclinsDNA-Binding ProteinsElectrophoretic Mobility Shift AssayProtein BindingRecombinant ProteinsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityTranscription FactorsCyclin-Dependent KinasesCyclinsDNA-Binding Proteinsinositol heptakisphosphateInositol PhosphatesPHO4 protein, S cerevisiaePHO80 protein, S cerevisiaePHO81 protein, S cerevisiaePHO85 protein, S cerevisiaeRecombinant ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID18059263
PMCPMC2367112
OpenAlexW1970513264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.