Evidence map›Paper›PMID 18058037›Full record

ReviewJournal of structural and functional genomics2007

Structural genomics of protein phosphatases.

Steven C Almo, Jeffrey B Bonanno, J Michael Sauder, Spencer Emtage, Teresa P Dilorenzo, Vladimir Malashkevich, Steven R Wasserman, S Swaminathan, Subramaniam Eswaramoorthy, Rakhi Agarwal and 13 more

Abstract readComparative StudyReview
In one paragraph

Review in Journal of structural and functional genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 160 citations in OpenAlex.

  1. Article
  2. ApaH decaps NpNature chemical biology · 2026
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  13. Crystal structure of the catalytic domain of human RPTPH.Acta crystallographica. Section F, Structural biology communications · 2022
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  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 1 country.

Steven C AlmoAlbert Einstein College of Medicine, Bronx, NY, USA. almo@aecom.yu.edu
Jeffrey B Bonanno
J Michael Sauder
Spencer Emtage
Teresa P Dilorenzo
Vladimir Malashkevich
Steven R Wasserman
S Swaminathan
Subramaniam Eswaramoorthy
Rakhi Agarwal
Desigan Kumaran
Mahendra Madegowda
Sugadev Ragumani
Yury Patskovsky
Johnjeff Alvarado
Udupi A Ramagopal
Joana Faber-Barata
Mark R Chance
Andrej Sali
Andras Fiser
Zhong-yin Zhang
David S Lawrence
Stephen K Burley
Brookhaven National Laboratory · USYeshiva University · USAlbert Einstein College of Medicine · USCase Western Reserve University · USIndiana University – Purdue University Indianapolis · USUniversity of California, San Francisco · USUniversity of North Carolina at Chapel Hill · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SEIDEL, RONALD D · 2010 to 2014
$32.6M
NIGMS NIH HHS U54 GM074945NIGMS NIH HHS U54 GM094662
6 · The paper itself

Abstract

The New York SGX Research Center for Structural Genomics (NYSGXRC) of the NIGMS Protein Structure Initiative (PSI) has applied its high-throughput X-ray crystallographic structure determination platform to systematic studies of all human protein phosphatases and protein phosphatases from biomedically-relevant pathogens. To date, the NYSGXRC has determined structures of 21 distinct protein phosphatases: 14 from human, 2 from mouse, 2 from the pathogen Toxoplasma gondii, 1 from Trypanosoma brucei, the parasite responsible for African sleeping sickness, and 2 from the principal mosquito vector of malaria in Africa, Anopheles gambiae. These structures provide insights into both normal and pathophysiologic processes, including transcriptional regulation, regulation of major signaling pathways, neural development, and type 1 diabetes. In conjunction with the contributions of other international structural genomics consortia, these efforts promise to provide an unprecedented database and materials repository for structure-guided experimental and computational discovery of inhibitors for all classes of protein phosphatases.

Indexed as

GenomicsAnimalsCrystallography, X-RayHumansMultigene FamilyPhosphoprotein PhosphatasesSequence Analysis, DNAPhosphoprotein Phosphatases

Identifiers

PMID18058037
PMCPMC4163028
OpenAlexW2133718112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.