Evidence map›Paper›PMID 18057125›Full record

ArticleJournal of clinical microbiology2008

Multilocus sequence typing reveals that the population structure of Candida dubliniensis is significantly less divergent than that of Candida albicans.

Brenda A McManus, David C Coleman, Gary Moran, Emmanuelle Pinjon, Dorothée Diogo, Marie-Elisabeth Bougnoux, Silvia Borecká-Melkusova, Helena Bujdákova, Philip Murphy, Christophe d'Enfert and 1 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Microorganisms · 2024
    Article
  4. Review
  5. Prevalence of Closely RelatedPolish journal of microbiology · 2023
    Article
  6. Review
  7. Clonal evolution ofJournal of oral microbiology · 2021
    Article
  8. Article
  9. Frontiers in cellular and infection microbiology · 2018
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Molecular fingerprints to identify Candida species.BioMed research international · 2013
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Brenda A McManusMicrobiology Research Unit, Division of Oral Biosciences, Dublin Dental School & Hospital, Trinity College-Dublin, University of Dublin, Dublin 2, Republic of Ireland.
David C Coleman
Gary Moran
Emmanuelle Pinjon
Dorothée Diogo
Marie-Elisabeth Bougnoux
Silvia Borecká-Melkusova
Helena Bujdákova
Philip Murphy
Christophe d'Enfert
Derek J Sullivan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pathogenic yeast Candida dubliniensis is phylogenetically very closely related to Candida albicans, and both species share many phenotypic and genetic characteristics. DNA fingerprinting using the species-specific probe Cd25 and sequence analysis of the internal transcribed spacer (ITS) region of the ribosomal gene cluster previously showed that C. dubliniensis is comprised of three major clades comprising four distinct ITS genotypes. Multilocus sequence typing (MLST) has been shown to be very useful for investigating the epidemiology and population biology of C. albicans and has identified many distinct major and minor clades. In the present study, we used MLST to investigate the population structure of C. dubliniensis for the first time. Combinations of 10 loci previously tested for MLST analysis of C. albicans were assessed for their discriminatory ability with 50 epidemiologically unrelated C. dubliniensis isolates from diverse geographic locations, including representative isolates from the previously identified three Cd25-defined major clades and the four ITS genotypes. Dendrograms created by using the unweighted pair group method with arithmetic averages that were generated using the data from all 10 loci revealed a population structure which supports that previously suggested by DNA fingerprinting and ITS genotyping. The MLST data revealed significantly less divergence within the C. dubliniensis population examined than within the C. albicans population. These findings show that MLST can be used as an informative alternative strategy for investigating the population structure of C. dubliniensis. On the basis of the highest number of genotypes per variable base, we recommend the following eight loci for MLST analysis of C. dubliniensis: CdAAT1b, CdACC1, CdADP1, CdMPIb, CdRPN2, CdSYA1, exCdVPS13, and exCdZWF1b, where "Cd" indicates C. dubliniensis and "ex" indicates extended sequence.

Indexed as

Polymorphism, GeneticAmino Acid SubstitutionCandidaCandidiasisCluster AnalysisDNA, FungalDNA PrimersFungal ProteinsGenotypeHumansMolecular EpidemiologyMycological Typing TechniquesSequence Analysis, DNASequence HomologyDNA, FungalDNA PrimersFungal Proteins

Identifiers

PMID18057125
PMCPMC2238146

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.