ArticleBioinformatics (Oxford, England)2008
Association studies for untyped markers with TUNA.
Article in Bioinformatics (Oxford, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Jackknife-based gene-gene interactiontests for untyped SNPs.BMC genetics · 2015Article
- DNA mismatch repair MSH2 gene-based SNP associated with different populations.Molecular genetics and genomics : MGG · 2014Article
- DIST: direct imputation of summary statistics for unmeasured SNPs.Bioinformatics (Oxford, England) · 2013Article
- Type 2 deiodinase and host responses of sepsis and acute lung injury.American journal of respiratory cell and molecular biology · 2011Article
- Interleukin-1 receptor-associated kinase 3 gene associates with susceptibility to acute lung injury.American journal of respiratory cell and molecular biology · 2011Article
- Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.BMC bioinformatics · 2011Article
- Gene, region and pathway level analyses in whole-genome studies.Genetic epidemiology · 2010Article
- ATRIUM: testing untyped SNPs in case-control association studies with related individuals.American journal of human genetics · 2009Article
- Single-nucleotide polymorphism bioinformatics: a comprehensive review of resources.Circulation. Cardiovascular genetics · 2009Review
- Restricted parameter space models for testing gene-gene interaction.Genetic epidemiology · 2009Article
- Prevalence of the Factor V Leiden Mutation Arg534Gln in Western Region of Saudi Arabia: Functional Alteration and Association Study With Different Populations.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/HemostasisArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
unlabelledThe software package TUNA (Testing UNtyped Alleles) implements a fast and efficient algorithm for testing association of genotyped and ungenotyped variants in genome-wide case-control studies. TUNA uses Linkage Disequilibrium (LD) information from existing comprehensive variation datasets such as HapMap to construct databases of frequency predictors using linear combination of haplotype frequencies of genotyped SNPs. The predictors are used to estimate untyped allele frequencies, and to perform association tests. The methods incorporated in TUNA achieve great accuracy in estimation, and the software is computationally efficient and does not demand a lot of system memory and CPU resources. AVAILABILITY: The software package is available for download from the website: http://www.stat.uchicago.edu/~wen/tuna/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.