Evidence map›Paper›PMID 18055845›Full record

ArticleGenome research2007

Computational and experimental identification of novel human imprinted genes.

Philippe P Luedi, Fred S Dietrich, Jennifer R Weidman, Jason M Bosko, Randy L Jirtle, Alexander J Hartemink

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 186 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
186citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

186 citing papers in PubMed, 1 synthesis or guideline pooled it, 397 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
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  6. Review
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  14. PLP1-Targeting Antisense Oligonucleotides Improve FOXG1 Syndrome Mice.International journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Livestock species as emerging models for genomic imprinting.Frontiers in cell and developmental biology · 2024
    Review
  18. Article
  19. BiallelicNeurology. Genetics · 2023
    Article
  20. Article

126 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Philippe P LuediCenter for Bioinformatics and Computational Biology, Duke University, Durham, North Carolina 27708, USA.
Fred S Dietrich
Jennifer R Weidman
Jason M Bosko
Randy L Jirtle
Alexander J Hartemink
Duke University · USDuke Medical Center · US

Funding

Integrated Toxicology ProgramT32ES007031 · NIEHS · DUKE UNIVERSITY · PI DI GIULIO, RICHARD · 1985 to 2007
$2.4M
Identification and Characterization of Epigenetically Labile GenesR01ES015165 · NIEHS · DUKE UNIVERSITY · PI JIRTLE, RANDY L · 2006 to 2009
$2.3M
Dietary Supplements, Imprint Gene Expression and CancerR21ES013053 · NIEHS · DUKE UNIVERSITY · PI JIRTLE, RANDY L · 2004 to 2006
$458k
NIEHS NIH HHS ES015165NIEHS NIH HHS ES13053NIEHS NIH HHS R01 ES015165NIEHS NIH HHS R21 ES013053NIEHS NIH HHS T32 ES007031NIEHS NIH HHS T32ES07031
6 · The paper itself

Abstract

Imprinted genes are essential in embryonic development, and imprinting dysregulation contributes to human disease. We report two new human imprinted genes: KCNK9 is predominantly expressed in the brain, is a known oncogene, and may be involved in bipolar disorder and epilepsy, while DLGAP2 is a candidate bladder cancer tumor suppressor. Both genes lie on chromosome 8, not previously suspected to contain imprinted genes. We identified these genes, along with 154 others, based on the predictions of multiple classification algorithms using DNA sequence characteristics as features. Our findings demonstrate that DNA sequence characteristics, including recombination hot spots, are sufficient to accurately predict the imprinting status of individual genes in the human genome.

Indexed as

Computational BiologyGenomic ImprintingAlgorithmsChromosome MappingFemaleGenome, HumanHumansMale

Identifiers

PMID18055845
PMCPMC2099581
OpenAlexW2171538603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.