Evidence map›Paper›PMID 18055600›Full record

ArticleJournal of bacteriology2008

RpoS expression and the general stress response in Azotobacter vinelandii during carbon and nitrogen diauxic shifts.

James R Sandercock, William J Page

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

James R SandercockDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada T6G2E9.
William J Page

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The general stress response mediated by the sigma factor RpoS is important for survival of bacteria in adverse environments. A mutant unable to produce RpoS was constructed using the diazotrophic bacterium Azotobacter vinelandii strain UW. Under nondesiccating, solid-medium growth conditions the wild type was culturable for 16.5 years, while the rpoS mutant remained viable for only 10 months. The rpoS mutant exhibited reduced survival compared to the wild type following hydrogen peroxide stress, and stationary phase cells were killed rapidly by 15 mM H2O2. Three catalases (Kat1, Kat2, and Kat3) were expressed in the wild type under the conditions used. Kat2 was expressed in exponential phase during shake flask growth and could be induced under highly aerated conditions in all growth phases, suggesting that there was induction by reactive oxygen intermediates. Kat3 was possibly an isoform of Kat2. In contrast, Kat1 was expressed in an RpoS-dependent manner during the mid-exponential to late stationary phases. RpoS expression did not occur exclusively in stationary phase but was influenced by changes in carbon and nitrogen source availability. There was 26- to 28-fold induction of the RpoS protein during acetate-to-glucose and ammonium-to-N2 diauxic shifts. Following recovery of growth on the alternative carbon or nitrogen source, RpoS protein concentrations declined rapidly to a basal level. However, rpoS mRNA levels did not correlate directly to RpoS levels, suggesting that there was posttranscriptional regulation. Evidence obtained using the RpoS-dependent reporter Kat1 suggested that there is regulation of the RNAP:RpoS holoenzyme at the level of complex formation or activity.

Indexed as

Gene Expression Regulation, BacterialHeat-Shock ResponseAzotobacter vinelandiiBacterial ProteinsCarbonCatalaseDNA, BacterialHydrogen PeroxideMolecular Sequence DataNitrogenOxidative StressRNA, BacterialRNA, MessengerRNA Processing, Post-TranscriptionalSequence Analysis, DNASigma FactorBacterial ProteinsCarbonCatalaseDNA, BacterialHydrogen PeroxideNitrogenRNA, BacterialRNA, MessengerSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID18055600
PMCPMC2223558

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.