Evidence map›Paper›PMID 18055535›Full record

ArticleBiophysical journal2008

Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue.

Yuji Miyazawa, Hirotaka Nishioka, Kei Yura, Takahisa Yamato

Abstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Theoretical insights into the DNA repair function ofBiophysics and physicobiology · 2020
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yuji MiyazawaGraduate School of Science, Nagoya University, Nagoya 464-8602, Japan.
Hirotaka Nishioka
Kei Yura
Takahisa Yamato

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA photolyase recognizes ultraviolet-damaged DNA and breaks improperly formed covalent bonds within the cyclobutane pyrimidine dimer by a light-activated electron transfer reaction between the flavin adenine dinucleotide, the electron donor, and cyclobutane pyrimidine dimer, the electron acceptor. Theoretical analysis of the electron-tunneling pathways of the DNA photolyase derived from Anacystis nidulans can reveal the active role of the protein environment in the electron transfer reaction. Here, we report the unexpectedly important role of the single methionine residue, Met-353, where busy trafficking of electron-tunneling currents is observed. The amino acid conservation pattern of Met-353 in the homologous sequences perfectly correlates with experimentally verified annotation as photolyases. The bioinformatics sequence analysis also suggests that the residue plays a pivotal role in biological function. Consistent findings from different disciplines of computational biology strongly suggest the pivotal role of Met-353 in the biological function of DNA photolyase.

Indexed as

Photoreceptor CellsComputational BiologyCyanobacteriaDeoxyribodipyrimidine Photo-LyaseDimerizationElectronsHot TemperatureLightMethionineModels, MolecularModels, StatisticalMolecular ConformationProteinsPyrimidine DimersTemperatureDeoxyribodipyrimidine Photo-LyaseMethionineProteinsPyrimidine Dimers

Identifiers

PMID18055535
PMCPMC2257881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.