Evidence map›Paper›PMID 18054557›Full record

ArticleGastroenterology2007

Epigenetic and genetic alterations in Netrin-1 receptors UNC5C and DCC in human colon cancer.

Sung Kwan Shin, Takeshi Nagasaka, Barbara H Jung, Nagahide Matsubara, Won Ho Kim, John M Carethers, C Richard Boland, Ajay Goel

Open access · bronzeAbstract read
In one paragraph

Article in Gastroenterology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Aberrant promoter methylation of the vimentin gene may contribute to colorectal carcinogenesis: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  2. Review
  3. Article
  4. Research progress of the netrins and their receptors in cancer.Journal of cellular and molecular medicine · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Cancers · 2020
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. The role ofAnnals of translational medicine · 2018
    Review
  18. HypermethylatedAmerican journal of translational research · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Sung Kwan ShinDivision of Gastroenterology, Department of Internal Medicine, Baylor University Medical Center, Dallas, Texas, USA.
Takeshi Nagasaka
Barbara H Jung
Nagahide Matsubara
Won Ho Kim
John M Carethers
C Richard Boland
Ajay Goel
Baylor University Medical Center · USUniversity of California, San Diego · USOkayama University · JPYonsei University · KR

Funding

The Biology and Diagnosis of HNPCCR01CA072851 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GOEL, AJAY · 1996 to 2019
$6.6M
MICROSATELLITE INSTABILITY &DNA MISMATCH REPAIR SYSTEMR01DK067287 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARETHERS, JOHN M · 2005 to 2015
$3.2M
The UCSD Digestive Diseases Research Development CenterR24DK080506 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKMANN, LARS · 2008 to 2012
$2.7M
JC Virus and Tumor Formation in the Human ColonR01CA098572 · NCI · BAYLOR RESEARCH INSTITUTE · PI BOLAND, CLEMENT RICHARD · 2004 to 2014
$2.7M
NCI NIH HHS R01 CA072851NCI NIH HHS R01 CA098572NCI NIH HHS R01 CA72851NCI NIH HHS R01 CA98572NIDDK NIH HHS R01 DK067287NIDDK NIH HHS R24 DK080506
6 · The paper itself

Abstract

BACKGROUND &

aimsDCC and UNC5C, Netrin-1 dependence receptors, perform an important role in intestinal epithelial biology. Both receptors frequently are down-regulated in colorectal cancer (CRC). Although CRCs frequently lose DCC owing to deletions at 18q, the mechanism for the UNC5C loss is poorly understood. We hypothesized that UNC5C is silenced epigenetically in CRC, and that there are interactions between losses of UNC5C and DCC in colorectal tumorigenesis.

methodsGene expression and epigenetic analysis of UNC5C was examined in 8 CRC cell lines, 147 sporadic CRCs with corresponding normal mucosa, and 52 adenomatous polyps (APs). Allelic imbalances at DCC were determined in CRCs. The molecular analyses were compared with genetic and clinicopathologic features.

resultsAll CRC cell lines showed UNC5C methylation and an associated loss of gene expression. Treatment with 5-Aza-2'-deoxycytidine resulted in restoration of gene transcription. UNC5C methylation was significantly higher in CRCs (76.2%) and APs (63.5%) than in corresponding normal mucosa (6%; P < .0001). Allelic imbalance at DCC was observed in 61% of CRCs. Overall, 89.3% of CRCs had alterations of one of the dependence receptors. UNC5C methylation occurred predominantly in the earlier lesions (APs and early CRCs), whereas DCC losses were more often in advanced CRCs.

conclusionsThe majority of CRCs harbor defects in Netrin-1 receptors, emphasizing the importance of this growth regulatory pathway in cancer. Furthermore, the timing of the molecular alterations in the Netrin-1 receptors is not random because UNC5C inactivation occurs early, whereas DCC losses occurs in later stages of multistep colorectal carcinogenesis.

Indexed as

Adenomatous PolypsAgedCell Line, TumorCell Transformation, NeoplasticColonic NeoplasmsDCC ReceptorEpigenesis, GeneticFemaleGene ExpressionHumansIntestinal MucosaMaleMiddle AgedMutationNerve Growth FactorsNetrin-1DCC protein, humanDCC ReceptorNerve Growth FactorsNetrin-1Netrin ReceptorsNTN1 protein, humanReceptors, Cell SurfaceTumor Suppressor ProteinsUNC5C protein, human

Identifiers

PMID18054557
PMCPMC4139066
OpenAlexW2031702481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.