ArticleJournal of structural biology2008
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data.
Article in Journal of structural biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
43 citing papers in PubMed.
- Modeling of Astrocyte Networks: Toward Realistic Topology and Dynamics.Frontiers in cellular neuroscience · 2021Article
- Database of literature derived cellular measurements from the murine basal ganglia.Scientific data · 2020Article
- ETDB-Caltech: A blockchain-based distributed public database for electron tomography.PloS one · 2019Article
- Combination Therapy for Multi-Target Manipulation of Secondary Brain Injury Mechanisms.Current neuropharmacology · 2018Review
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- Astrocyte structural reactivity and plasticity in models of retinal detachment.Experimental eye research · 2016Review
- A validated active contour method driven by parabolic arc model for detection and segmentation of mitochondria.Journal of structural biology · 2016Article
- The Caltech Tomography Database and Automatic Processing Pipeline.Journal of structural biology · 2015Article
- Survey statistics of automated segmentations applied to optical imaging of mammalian cells.BMC bioinformatics · 2015Article
- The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.Journal of biomedical semantics · 2013Article
- A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development.Journal of mathematical biology · 2013Review
- Review
- A comparative antibody analysis of pannexin1 expression in four rat brain regions reveals varying subcellular localizations.Frontiers in pharmacology · 2013Article
- Mathematical Models of Blast-Induced TBI: Current Status, Challenges, and Prospects.Frontiers in neurology · 2013Article
- Semi-automated neuron boundary detection and nonbranching process segmentation in electron microscopy images.Neuroinformatics · 2013Article
- Building retinal connectomes.Current opinion in neurobiology · 2012Review
- neuroVIISAS: approaching multiscale simulation of the rat connectome.Neuroinformatics · 2012Article
- Innovation in biological microscopy: current status and future directions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2012Review
- Managing and Querying Whole Slide Images.Proceedings of SPIE--the International Society for Optical Engineering · 2012Article
Corrections and comments
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Authors and funding
9 authors.
Funding
Abstract
Databases have become integral parts of data management, dissemination, and mining in biology. At the Second Annual Conference on Electron Tomography, held in Amsterdam in 2001, we proposed that electron tomography data should be shared in a manner analogous to structural data at the protein and sequence scales. At that time, we outlined our progress in creating a database to bring together cell level imaging data across scales, The Cell Centered Database (CCDB). The CCDB was formally launched in 2002 as an on-line repository of high-resolution 3D light and electron microscopic reconstructions of cells and subcellular structures. It contains 2D, 3D, and 4D structural and protein distribution information from confocal, multiphoton, and electron microscopy, including correlated light and electron microscopy. Many of the data sets are derived from electron tomography of cells and tissues. In the 5 years since its debut, we have moved the CCDB from a prototype to a stable resource and expanded the scope of the project to include data management and knowledge engineering. Here, we provide an update on the CCDB and how it is used by the scientific community. We also describe our work in developing additional knowledge tools, e.g., ontologies, for annotation and query of electron microscopic data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.