ArticleBMC genomics2007
Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.
Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
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- Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination.Microbiome · 2018Article
- ppdb: plant promoter database version 3.0.Nucleic acids research · 2014Article
- Open access to tree genomes: the path to a better forest.Genome biology · 2013Article
- Genome-wide discovery and information resource development of DNA polymorphisms in cassava.PloS one · 2013Article
- Article
- Forest tree genomics: growing resources and applications.Nature reviews. Genetics · 2011Review
- Gene discovery from Jatropha curcas by sequencing of ESTs from normalized and full-length enriched cDNA library from developing seeds.BMC genomics · 2010Article
- VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system.Plant physiology · 2010Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
- A full-length enriched cDNA library and expressed sequence tag analysis of the parasitic weed, Striga hermonthica.BMC plant biology · 2010Article
- A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.BMC genomics · 2009Article
- Phenome analysis in plant species using loss-of-function and gain-of-function mutants.Plant & cell physiology · 2009Review
- Functional genomics using RIKEN Arabidopsis thaliana full-length cDNAs.Journal of plant research · 2009Review
- Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila.BMC plant biology · 2008Article
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Authors and funding
12 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundPopulus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era, functional genomics of Populus is getting more important for well-comprehended plant science. Development of bioresorce serving functional genomics is making rapid progress. Huge efforts have achieved deposits of expressed sequence tags (ESTs) in various plant species consequently accelerating functional analysis of genes. ESTs from full-length cDNA clones are especially powerful for accurate molecular annotation. We promoted collection and annotation of the ESTs from Populus full-length enriched cDNA clones as part of functional genomics of tree species.
resultsWe have been collecting the full-length enriched cDNA of the female poplar (Populus nigra var. italica) for years. By sequencing P. nigra full-length (PnFL) cDNA libraries, we generated about 116,000 5'-end or 3'-end ESTs corresponding to 19,841 nonredundant PnFL clones. Population of PnFL cDNA clones represents 44% of the predicted genes in the Populus genome.
conclusionOur resource of P. nigra full-length enriched clones is expected to provide valuable tools to gain further insight into genome annotation and functional genomics in Populus.
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