Evidence map›Paper›PMID 18047684›Full record

ArticleBMC cancer2007

Epigenetic regulation of RhoB loss of expression in lung cancer.

Julien Mazières, Daniel Tovar, Biao He, Jacobo Nieto-Acosta, Claire Marty-Detraves, Carine Clanet, Anne Pradines, David Jablons, Gilles Favre

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

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  17. Targeting histone deacetylases for the treatment of disease.Journal of cellular and molecular medicine · 2009
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Julien MazièresINSERM U563 - Département Innovation Thérapeutique et Oncologie Moléculaire, F-31052, Toulouse, France. mazieres.j@chu-toulouse.fr
Daniel Tovar
Biao He
Jacobo Nieto-Acosta
Claire Marty-Detraves
Carine Clanet
Anne Pradines
David Jablons
Gilles Favre
Université Toulouse III - Paul Sabatier · FRInstitut Claudius Regaud · FRUniversity of California, San Francisco · USInserm · FRLaboratoire de Microbiologie et Génétique Moléculaires · FR

Funding

The Wnt Pathway in Malignant MesotheliomaR01CA093708 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JABLONS, DAVID M. · 2005 to 2008
$883k
NCI NIH HHS R01 CA093708
6 · The paper itself

Abstract

backgroundRhoB is down-regulated in most lung cancer cell lines and tumor tissues when compared with their normal counterparts. The mechanism of this loss of expression is not yet deciphered.

methodsSince no mutation has been reported in the RhoB sequence, we investigated the epigenetic regulation of RhoB expression by analyzing the effect of HDAC inhibitors and methyltransferase inhibitors, by direct sequencing after bisulfite treatment and by methylation specific PCR.

resultsWe first showed that histone deacetylase (HDAC) inhibitors induce a significant RhoB re-expression in lung cancer cell lines whereas only a slight effect was observed with methyl transferase inhibitors. As promoter methylation is the most common epigenetic process in lung cancer, we performed methylation specific PCR and sequence analysis after bisulfite treatment and demonstrated that RhoB was methylated neither in lung cancer cell lines nor in tumor tissues. We also showed that a variable number of tandem repeats sequences in the 5' region of the RhoB gene was involved in HDAC response.

conclusionWe thus propose that RhoB regulation of expression occurs mainly by histone deacetylation rather than by promoter hypermethylation and that this process can be modulated by specific 5' sequences within the promoter.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticAzacitidineBase SequenceCarcinoma, Non-Small-Cell LungCell Line, TumorDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDown-RegulationEnzyme InhibitorsGene ExpressionGene SilencingHistone Deacetylase InhibitorsHumansImmunoblottingLung NeoplasmsAzacitidineDNA (Cytosine-5-)-MethyltransferasesEnzyme InhibitorsHistone Deacetylase Inhibitorshydrogen sulfiterhoB GTP-Binding ProteinSulfites

Identifiers

PMID18047684
PMCPMC2222678
OpenAlexW2144845930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.