Evidence map›Paper›PMID 18044988›Full record

ArticlePLoS biology2007

Mutation of RNA Pol III subunit rpc2/polr3b Leads to Deficiency of Subunit Rpc11 and disrupts zebrafish digestive development.

Nelson S Yee, Weilong Gong, Ying Huang, Kristin Lorent, Amy C Dolan, Richard J Maraia, Michael Pack

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 76 citations in OpenAlex.

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  5. Molecular basis of neurodegeneration in a mouse model ofbioRxiv : the preprint server for biology · 2024
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  6. Novel Pathogenic Variants inHuman mutation · 2024
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  7. Article
  8. Article
  9. RNA Polymerases I and III in development and disease.Seminars in cell & developmental biology · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. RNA Polymerase III Subunit Mutations in Genetic Diseases.Frontiers in molecular biosciences · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Mutation inNeurology. Genetics · 2018
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nelson S YeeDepartment of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Weilong Gong
Ying Huang
Kristin Lorent
Amy C Dolan
Richard J Maraia
Michael Pack
University of Pennsylvania · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USNational Institutes of Health · US

Funding

MOLECULAR ANALYSIS OF ZEBRAFISH DIGESTIVE MUTANTSR01DK054942 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI PACK, MICHAEL A · 1999 to 2010
$2.6M
Exocrine Pancreas &Intestinal Epithelial DevelopmentR01DK061142 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI PACK, MICHAEL A · 2001 to 2005
$2.0M
MOLECULAR REGULATION OF GENE EXPRESSIONZ01HD000412 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MARAIA, RICHARD J · 1988 to 2008
$1.8M
Analysis of zebrafish exocrine pancreas developmentK08DK060529 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI YEE, NELSON SHU-SANG · 2002 to 2006
$648k
Intramural NIH HHSNIDDK NIH HHS K08 DK060529NIDDK NIH HHS K08-DK60529NIDDK NIH HHS R01 DK054942NIDDK NIH HHS R01 DK061142NIDDK NIH HHS R01-DK54942NIDDK NIH HHS R01-DK61142
6 · The paper itself

Abstract

The role of RNA polymerase III (Pol III) in developing vertebrates has not been examined. Here, we identify a causative mutation of the second largest Pol III subunit, polr3b, that disrupts digestive organ development in zebrafish slim jim (slj) mutants. The slj mutation is a splice-site substitution that causes deletion of a conserved tract of 41 amino acids in the Polr3b protein. Structural considerations predict that the slj Pol3rb deletion might impair its interaction with Polr3k, the ortholog of an essential yeast Pol III subunit, Rpc11, which promotes RNA cleavage and Pol III recycling. We engineered Schizosaccharomyces pombe to carry an Rpc2 deletion comparable to the slj mutation and found that the Pol III recovered from this rpc2-delta yeast had markedly reduced levels of Rpc11p. Remarkably, overexpression of cDNA encoding the zebrafish rpc11 ortholog, polr3k, rescued the exocrine defects in slj mutants, indicating that the slj phenotype is due to deficiency of Rpc11. These data show that functional interactions between Pol III subunits have been conserved during eukaryotic evolution and support the utility of zebrafish as a model vertebrate for analysis of Pol III function.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell ProliferationDigestive SystemLarvaMutationOligonucleotides, AntisenseRNA Polymerase IIIZebrafishOligonucleotides, AntisenseRNA Polymerase III

Identifiers

PMID18044988
PMCPMC2229849
OpenAlexW2075727030

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.