Evidence map›Paper›PMID 18042715›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes.

Dag H Yasui, Sailaja Peddada, Mark C Bieda, Roxanne O Vallero, Amber Hogart, Raman P Nagarajan, Karen N Thatcher, Peggy J Farnham, Janine M Lasalle

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 205 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
205citing papers in PubMed, 1 pooled it
21.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

205 citing papers in PubMed, 1 synthesis or guideline pooled it, 375 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Epigenetics in rare neurological diseases.Frontiers in cell and developmental biology · 2024
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Rett Syndrome andNeuropsychiatric disease and treatment · 2022
    Review
  18. Proteins That Read DNA Methylation.Advances in experimental medicine and biology · 2022
    Article
  19. Article
  20. Article

145 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Dag H YasuiDepartment of Medical Microbiology and Immunology, Rowe Program in Human Genetics, School of Medicine, University of California, 1 Shields Avenue, Davis, CA 95616, USA.
Sailaja Peddada
Mark C Bieda
Roxanne O Vallero
Amber Hogart
Raman P Nagarajan
Karen N Thatcher
Peggy J Farnham
Janine M Lasalle
University of California, Davis · US

Funding

The Role of MeCP2 in Rett SyndromeR01HD041462 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI LASALLE, JANINE M · 2002 to 2011
$2.8M
VASCULAR CONTROL OF BLOOD CELL REACTIVITY IN THROMBOSISR01NS041462 · NINDS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI MARCUS, AARON JACOB · 2000 to 2005
$2.1M
Epigenetic Etiologies of Autism-Spectrum DisordersR01HD048799 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI LASALLE, JANINE M · 2005 to 2009
$1.8M
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012088 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI CURRY, FITZ-ROY E · 1996 to 1996
–
NCRR NIH HHS C06 RR012088NCRR NIH HHS C06 RR12088NICHD NIH HHS R01 HD041462NICHD NIH HHS R01 HD048799NICHD NIH HHS R01 HD/NS41462NINDS NIH HHS R01 NS041462
6 · The paper itself

Abstract

Mutations in MECP2 cause the autism-spectrum disorder Rett syndrome. MeCP2 is predicted to bind to methylated promoters and silence transcription. However, the first large-scale mapping of neuronal MeCP2-binding sites on 26.3 Mb of imprinted and nonimprinted loci revealed that 59% of MeCP2-binding sites are outside of genes and that only 6% are in CpG islands. Integrated genome-wide promoter analysis of MeCP2 binding, CpG methylation, and gene expression revealed that 63% of MeCP2-bound promoters are actively expressed and that only 6% are highly methylated. These results indicate that the primary function of MeCP2 is not the silencing of methylated promoters.

Indexed as

Gene Expression RegulationBinding SitesChromatin ImmunoprecipitationCpG IslandsDNA MethylationGene SilencingHumansMethyl-CpG-Binding Protein 2NeuronsPromoter Regions, GeneticRett SyndromeMethyl-CpG-Binding Protein 2

Identifiers

PMID18042715
PMCPMC2148304
OpenAlexW2113377321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.