Evidence map›Paper›PMID 18042709›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Yeast gain-of-function mutations reveal structure-function relationships conserved among different subfamilies of transient receptor potential channels.

Zhenwei Su, Xinliang Zhou, W John Haynes, Stephen H Loukin, Andriy Anishkin, Yoshiro Saimi, Ching Kung

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Function and regulation of TRPP2 ion channel revealed by a gain-of-function mutant.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  3. Article
  4. Article
  5. Article
  6. Progressive degeneration of dopaminergic neurons through TRP channel-induced cell death.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  7. Conserved gating elements in TRPC4 and TRPC5 channels.The Journal of biological chemistry · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. The use of yeast to understand TRP-channel mechanosensitivity.Pflugers Archiv : European journal of physiology · 2009
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhenwei SuLaboratory of Molecular Biology and Department of Genetics, University of Wisconsin, Madison, WI 53706, USA.
Xinliang Zhou
W John Haynes
Stephen H Loukin
Andriy Anishkin
Yoshiro Saimi
Ching Kung
University of Maryland, College Park · USUniversity of Wisconsin–Madison · US

Funding

Study of mechanosensation using microbial TRP channelsR01GM047856 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KUNG, CHING · 1994 to 2008
$2.2M
Molecular Basis of Hypertonicity Sensing by Yeast Yvc1pR01GM054867 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KUNG, CHING · 1998 to 2010
$2.2M
NIGMS NIH HHS GM047856NIGMS NIH HHS GM054867NIGMS NIH HHS R01 GM047856NIGMS NIH HHS R01 GM054867
6 · The paper itself

Abstract

Transient receptor potential (TRP) channels found in animals, protists, and fungi are primary chemo-, thermo-, or mechanosensors. Current research emphasizes the characteristics of individual channels in each animal TRP subfamily but not the mechanisms common across subfamilies. A forward genetic screen of the TrpY1, the yeast TRP channel, recovered gain-of-function (GOF) mutations with phenotype in vivo and in vitro. Single-channel patch-clamp analyses of these GOF-mutant channels show prominent aberrations in open probability and channel kinetics. These mutations revealed functionally important aromatic amino acid residues in four locations: at the intracellular end of the fifth transmembrane helix (TM5), at both ends of TM6, and at the immediate extension of TM6. These aromatics have counterparts in most TRP subfamilies. The one in TM5 (F380L) aligns precisely with an exceptional Drosophila mutant allele (F550I) that causes constitutive activity in the canonical TRP channel, resulting in rapid and severe retinal degeneration beyond mere loss of phototaxis. Thus, this phenylalanine maintains the balance of various functional states (conformations) of a channel for insect phototransduction as well as one for fungal mechanotransduction. This residue is among a small cluster of phenylalanines found in all known subfamilies of TRP channels. This unique case illustrates that GOF mutations can reveal structure-function principles that can be generalized across different TRP subfamilies. It appears that the conserved aromatics in the four locations have conserved functions in most TRP channels. The possible mechanistic roles of these aromatics and the further use of yeast genetics to dissect TRP channels are discussed.

Indexed as

Amino Acids, AromaticAmino Acid SequenceConserved SequenceFungal ProteinsMolecular Sequence DataMutationPatch-Clamp TechniquesStructure-Activity RelationshipTransient Receptor Potential ChannelsYeastsAmino Acids, AromaticFungal ProteinsTransient Receptor Potential Channels

Identifiers

PMID18042709
PMCPMC2148336
OpenAlexW2009566667

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.