Evidence map›Paper›PMID 18039708›Full record

ArticleNucleic acids research2008

Retinoic acid modulates chromatin to potentiate tumor necrosis factor alpha signaling on the DIF2 promoter.

Michael Witcher, Filippa Pettersson, Daphne Dupéré-Richer, Alessandra Padovani, Leslie Summers-Deluca, Albert S Baldwin, Wilson H Miller

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Tumor-infiltrating monocytic myeloid-derived suppressor cells contribute to the development of an immunosuppressive tumor microenvironment in gastric cancer.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2024
    Article
  2. Article
  3. Disparate roles of retinoid acid signaling molecules in kidney disease.American journal of physiology. Renal physiology · 2021
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Michael WitcherLady Davis Institute for Medical Research, Segal Cancer Centre of the SMBD Jewish General Hospital, McGill University, Montreal H3T1E2, Quebec, Canada.
Filippa Pettersson
Daphne Dupéré-Richer
Alessandra Padovani
Leslie Summers-Deluca
Albert S Baldwin
Wilson H Miller
University of North Carolina at Chapel Hill · USJewish General Hospital · CA

Funding

Unexpected Nucleosomal Functions for the IKKsR37AI035098 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BALDWIN, ALBERT SIDNEY · 2004 to 2013
$3.2M
Unusual Regulation of the NF-kappaB/IKK Pathway by RasR01CA073756 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BALDWIN, ALBERT SIDNEY · 1998 to 2014
$3.2M
TNF SIGNALING--ACTIVATION OF NF-KB AND GENE EXPRESSIONR01AI035098 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI BALDWIN, ALBERT SIDNEY · 1994 to 2003
$981k
NCI NIH HHS CA73756NCI NIH HHS R01 CA073756NIAID NIH HHS AI35098NIAID NIH HHS R01 AI035098NIAID NIH HHS R37 AI035098
6 · The paper itself

Abstract

Transcriptional activation by nuclear hormone receptors is well characterized, but their cooperation with other signaling pathways to activate transcription remains poorly understood. Tumor necrosis factor alpha (TNFalpha) and all-trans retinoic acid (RA) induce monocytic differentiation of acute promyelocytic leukemia (APL) cells in a synergistic manner. We used the promoter of DIF2, a gene involved in monocytic differentiation, to model the mechanism underlying the cooperative induction of target genes by RA and TNFalpha. We show a functional RA response element in the DIF2 promoter, which is constitutively bound by PML/RARalpha in APL cells. RA stimulates release of corepressors and recruitment of chromatin modifying proteins and additional transcription factors to the promoter, but these changes cause only a modest induction of DIF2 mRNA. Co-stimulation with RA plus TNFalpha facilitates binding of NF-kappaB to the promoter, which is crucial for full induction of transcription. Furthermore, RA plus TNFalpha greatly enhanced the level of RNA Pol II phosphorylation on the DIF2 promoter, via synergistic recruitment of TFIIH. We propose that RA mediates remodeling of chromatin to facilitate binding of transcription factors, which cooperate to enhance Pol II phosphorylation, providing a mechanism whereby nuclear receptors interact with other signaling pathways on the level of transcription.

Indexed as

Chromatin Assembly and DisassemblyPromoter Regions, GeneticTranscriptional ActivationApoptosis Regulatory ProteinsCell LineCell NucleusChromatinDrug SynergismHumansMembrane ProteinsNF-kappa BResponse ElementsRNA Polymerase IISignal TransductionTranscription Factor RelATranscription FactorsApoptosis Regulatory ProteinsChromatinIER3 protein, humanMembrane ProteinsNF-kappa BRNA Polymerase IITranscription Factor RelATranscription FactorsTranscription Factor TFIIHTretinoinTumor Necrosis Factor-alpha

Identifiers

PMID18039708
PMCPMC2241879
OpenAlexW2014297130

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.