Evidence map›Paper›PMID 18039354›Full record

ArticleGenome biology2007

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution.

Filipe G Vieira, Alejandro Sánchez-Gracia, Julio Rozas

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Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

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93citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

93 citing papers in PubMed.

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  18. Odorant-Binding Proteins and Chemosensory Proteins inInternational journal of molecular sciences · 2023
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33 more citing papers are in PubMed but not listed here.

4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Filipe G VieiraDepartament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av, Diagonal 645, Barcelona 08028, Spain. fgarret@ub.edu
Alejandro Sánchez-Gracia
Julio Rozas

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChemoreception is a widespread mechanism that is involved in critical biologic processes, including individual and social behavior. The insect peripheral olfactory system comprises three major multigene families: the olfactory receptor (Or), the gustatory receptor (Gr), and the odorant-binding protein (OBP) families. Members of the latter family establish the first contact with the odorants, and thus constitute the first step in the chemosensory transduction pathway.

resultsComparative analysis of the OBP family in 12 Drosophila genomes allowed the identification of 595 genes that encode putative functional and nonfunctional members in extant species, with 43 gene gains and 28 gene losses (15 deletions and 13 pseudogenization events). The evolution of this family shows tandem gene duplication events, progressive divergence in DNA and amino acid sequence, and prevalence of pseudogenization events in external branches of the phylogenetic tree. We observed that the OBP arrangement in clusters is maintained across the Drosophila species and that purifying selection governs the evolution of the family; nevertheless, OBP genes differ in their functional constraints levels. Finally, we detect that the OBP repertoire evolves more rapidly in the specialist lineages of the Drosophila melanogaster group (D. sechellia and D. erecta) than in their closest generalists.

conclusionOverall, the evolution of the OBP multigene family is consistent with the birth-and-death model. We also found that members of this family exhibit different functional constraints, which is indicative of some functional divergence, and that they might be involved in some of the specialization processes that occurred through the diversification of the Drosophila genus.

Indexed as

Evolution, MolecularGenomeSelection, GeneticAnimalsChromosome MappingDrosophilaMultigene FamilyOdorantsPhylogenySequence AlignmentSpecies Specificity

Identifiers

PMID18039354
PMCPMC2258175

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.