Evidence map›Paper›PMID 18037437›Full record

ArticleJournal of molecular biology2008

Actin hydrophobic loop 262-274 and filament nucleation and elongation.

Alexander Shvetsov, Vitold E Galkin, Albina Orlova, Martin Phillips, Sarah E Bergeron, Peter A Rubenstein, Edward H Egelman, Emil Reisler

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Journal of chemical theory and computation · 2023
    Article
  2. Article
  3. International journal of molecular sciences · 2021
    Article
  4. Article
  5. Near-atomic resolution for one state of F-actin.Structure (London, England : 1993) · 2015
    Article
  6. Article
  7. ATP and ADP actin states.Biopolymers · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Alexander ShvetsovDepartment of Chemistry and Biochemistry and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA.
Vitold E Galkin
Albina Orlova
Martin Phillips
Sarah E Bergeron
Peter A Rubenstein
Edward H Egelman
Emil Reisler
University of California, Los Angeles · USUniversity of Virginia · USUniversity of Iowa · US

Funding

Dynamic Events in Myosin and Actin and Their FunctionR01GM077190 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REISLER, EMIL · 2006 to 2020
$6.2M
MUTAGENIC STUDY OF YEAST ACTIN CONFORMATIONAL CHANGESR01GM033689 · NIGMS · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 1985 to 2010
$3.7M
DYNAMIC EVENTS IN MYOSIN DURING CONTRACTION OF MUSCLER01AR022031 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REISLER, EMIL · 1986 to 2004
$2.5M
STRUCTURAL STUDIES OF ACTIN AND TUBULINR01AR042023 · NIAMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI EGELMAN, EDWARD H. · 1994 to 2006
$2.1M
NIAMS NIH HHS AR042023NIAMS NIH HHS R01 AR022031NIAMS NIH HHS R01 AR042023NIGMS NIH HHS GM 077190NIGMS NIH HHS GM33689NIGMS NIH HHS R01 GM033689NIGMS NIH HHS R01 GM077190
6 · The paper itself

Abstract

The importance of actin hydrophobic loop 262-274 dynamics to actin polymerization and filament stability has been shown recently with the use of the yeast mutant actin L180C/L269C/C374A, in which the hydrophobic loop could be locked in a "parked" conformation by a disulfide bond between C180 and C269. Such a cross-linked globular actin monomer does not form filaments, suggesting nucleation and/or elongation inhibition. To determine the role of loop dynamics in filament nucleation and/or elongation, we studied the polymerization of the cross-linked actin in the presence of cofilin, to assist with actin nucleation, and with phalloidin, to stabilize the elongating filament segments. We demonstrate here that together, but not individually, phalloidin and cofilin co-rescue the polymerization of cross-linked actin. The polymerization was also rescued by filament seeds added together with phalloidin but not with cofilin. Thus, loop immobilization via cross-linking inhibits both filament nucleation and elongation. Nevertheless, the conformational changes needed to catalyze ATP hydrolysis by actin occur in the cross-linked actin. When actin filaments are fully decorated by cofilin, the helical twist of filamentous actin (F-actin) changes by approximately 5 degrees per subunit. Electron microscopic analysis of filaments rescued by cofilin and phalloidin revealed a dense contact between opposite strands in F-actin and a change of twist by approximately 1 degrees per subunit, indicating either partial or disordered attachment of cofilin to F-actin and/or competition between cofilin and phalloidin to alter F-actin symmetry. Our findings show an importance of the hydrophobic loop conformational dynamics in both actin nucleation and elongation and reveal that the inhibition of these two steps in the cross-linked actin can be relieved by appropriate factors.

Indexed as

Actin CytoskeletonActin Depolymerizing FactorsActinsCross-Linking ReagentsDisulfidesDithiothreitolEscherichia coliFluorometryHydrophobic and Hydrophilic InteractionsLightMagnesium ChlorideMutationPhalloidineProtein ConformationProtein Structure, SecondaryRhodaminesActin Depolymerizing FactorsActinsCross-Linking ReagentsDisulfidesDithiothreitolMagnesium ChloridePhalloidineRhodamines

Identifiers

PMID18037437
PMCPMC4022318
OpenAlexW1967820095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.