Evidence map›Paper›PMID 18034894›Full record

ArticleBMC biotechnology2007

A focused antibody library for selecting scFvs expressed at high levels in the cytoplasm.

Pascal Philibert, Audrey Stoessel, Wei Wang, Annie-Paule Sibler, Nicole Bec, Christian Larroque, Jeffery G Saven, Jérôme Courtête, Etienne Weiss, Pierre Martineau

Abstract read
In one paragraph

Article in BMC biotechnology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Egyptian rousette bat humoral immunity to H9 influenza hemagglutinin.bioRxiv : the preprint server for biology · 2026
    Article
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  5. Article
  6. Article
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  9. Antibody-mediated enzyme formation: Its legacy at age fifty-four.Journal of molecular recognition : JMR · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. A Two-Step Approach for the Design and Generation of Nanobodies.International journal of molecular sciences · 2018
    Article
  16. Review
  17. Review
  18. Article
  19. Expression of recombinant antibodies.Frontiers in immunology · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pascal PhilibertCNRS, UMR5160, CRLC, 15, av, Charles Flahault, BP14491, 34093, Montpellier Cedex 5, France. pascal.philibert@tiscali.fr
Audrey Stoessel
Wei Wang
Annie-Paule Sibler
Nicole Bec
Christian Larroque
Jeffery G Saven
Jérôme Courtête
Etienne Weiss
Pierre Martineau

Funding

Computational Studies of Protein Folding and DesignR01GM061267 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SAVEN, JEFFERY G · 2002 to 2006
$1.2M
NIGMS NIH HHS GM 61267NIGMS NIH HHS R01 GM061267
6 · The paper itself

Abstract

backgroundIntrabodies are defined as antibody molecules which are ectopically expressed inside the cell. Such intrabodies can be used to visualize or inhibit the targeted antigen in living cells. However, most antibody fragments cannot be used as intrabodies because they do not fold under the reducing conditions of the cell cytosol and nucleus.

resultsWe describe the construction and validation of a large synthetic human single chain antibody fragment library based on a unique framework and optimized for cytoplasmic expression. Focusing the library by mimicking the natural diversity of CDR3 loops ensured that the scFvs were fully human and functional. We show that the library is highly diverse and functional since it has been possible to isolate by phage-display several strong binders against the five proteins tested in this study, the Syk and Aurora-A protein kinases, the alphabeta tubulin dimer, the papillomavirus E6 protein and the core histones. Some of the selected scFvs are expressed at an exceptional high level in the bacterial cytoplasm, allowing the purification of 1 mg of active scFv from only 20 ml of culture. Finally, we show that after three rounds of selection against core histones, more than half of the selected scFvs were active when expressed in vivo in human cells since they were essentially localized in the nucleus.

conclusionThis new library is a promising tool not only for an easy and large-scale selection of functional intrabodies but also for the isolation of highly expressed scFvs that could be used in numerous biotechnological and therapeutic applications.

Indexed as

Peptide LibraryAnimalsAntibodies, MonoclonalAntibody DiversityAntibody SpecificityAurora KinasesCloning, MolecularComplementarity Determining RegionsCytoplasmGene LibraryHumansImmunoglobulin SubunitsIntracellular Signaling Peptides and ProteinsOncogene Proteins, ViralProtein Processing, Post-TranslationalProtein Serine-Threonine KinasesAntibodies, MonoclonalAurora KinasesComplementarity Determining RegionsE6 protein, Human papillomavirus type 16Immunoglobulin SubunitsIntracellular Signaling Peptides and ProteinsOncogene Proteins, ViralPeptide LibraryProtein Serine-Threonine KinasesProtein-Tyrosine KinasesRepressor ProteinsSyk KinaseSYK protein, humanTubulin

Identifiers

PMID18034894
PMCPMC2241821

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.