Evidence map›Paper›PMID 18032730›Full record

ArticleGenome research2008

A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: implications for the facio-scapulo-humeral dystrophy.

Andrei Petrov, Jeanne Allinne, Iryna Pirozhkova, Dalila Laoudj, Marc Lipinski, Yegor S Vassetzky

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. 3D genome alterations and editing in pathology.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Andrei PetrovUMR 8126, Centre National de la Recherche Scientifique-Université Paris-Sud 11, Institut de Cancérologie Gustave-Roussy, F-94804 Villejuif, France.
Jeanne Allinne
Iryna Pirozhkova
Dalila Laoudj
Marc Lipinski
Yegor S Vassetzky
Université Paris-Sud · FRPhysiologie et Médecine Expérimentale du Coeur et des Muscles · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Facio-scapulo-humeral dystrophy (FSHD), a muscular hereditary disease with a prevalence of 1 in 20,000, is caused by a partial deletion of a subtelomeric repeat array on chromosome 4q. Earlier, we demonstrated the existence in the vicinity of the D4Z4 repeat of a nuclear matrix attachment site, FR-MAR, efficient in normal human myoblasts and nonmuscular human cells but much weaker in muscle cells from FSHD patients. We now report that the D4Z4 repeat contains an exceptionally strong transcriptional enhancer at its 5'-end. This enhancer up-regulates transcription from the promoter of the neighboring FRG1 gene. However, an enhancer blocking activity was found present in FR-MAR that in vitro could protect transcription from the enhancer activity of the D4Z4 array. In vivo, transcription from the FRG1 and FRG2 genes could be down- or up-regulated depending on whether or not FR-MAR is associated with the nuclear matrix. We propose a model for an etiological role of the delocalization of FR-MAR in the genesis of FSHD.

Indexed as

Models, GeneticChromosomes, Human, Pair 4Enhancer Elements, GeneticHeLa CellsHumansMatrix Attachment RegionsMicrofilament ProteinsMuscular Dystrophy, FacioscapulohumeralMyoblastsNuclear ProteinsProteinsQuantitative Trait LociRNA-Binding ProteinsTranscription, GeneticUp-RegulationFRG1 protein, humanFRG2 protein, humanMicrofilament ProteinsNuclear ProteinsProteinsRNA-Binding Proteins

Identifiers

PMID18032730
PMCPMC2134777
OpenAlexW2166236066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.