Evidence map›Paper›PMID 18031719›Full record

ArticleDevelopmental biology2008

Sox3 expression is maintained by FGF signaling and restricted to the neural plate by Vent proteins in the Xenopus embryo.

Crystal D Rogers, Tenley C Archer, Doreen D Cunningham, Timothy C Grammer, Elena M Silva Casey

Abstract read
In one paragraph

Article in Developmental biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. The Organizer and Its Signaling in Embryonic Development.Journal of developmental biology · 2021
    Review
  9. Review
  10. Specifying neural crest cells: From chromatin to morphogens and factors in between.Wiley interdisciplinary reviews. Developmental biology · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Assessing Primary Neurogenesis in Xenopus Embryos Using Immunostaining.Journal of visualized experiments : JoVE · 2016
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Crystal D RogersDepartment of Biology, Georgetown University, Washington, DC 20057, USA.
Tenley C Archer
Doreen D Cunningham
Timothy C Grammer
Elena M Silva Casey
Georgetown University · USUniversity of California, Berkeley · US

Funding

Gene Expression in Amphibian DevlopementR01GM042341 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARLAND, RICHARD M · 1988 to 2016
$5.7M
Characterization of SoxB genes in neural developmentR01NS048918 · NINDS · GEORGETOWN UNIVERSITY · PI SILVA, ELENA M · 2005 to 2008
$1.1M
NIGMS NIH HHS GM42341NIGMS NIH HHS R01 GM042341NINDS NIH HHS NS048918NINDS NIH HHS R01 NS048918
6 · The paper itself

Abstract

The formation of the nervous system is initiated when ectodermal cells adopt the neural fate. Studies in Xenopus demonstrate that inhibition of BMP results in the formation of neural tissue. However, the molecular mechanism driving the expression of early neural genes in response to this inhibition is unknown. Moreover, controversy remains regarding the sufficiency of BMP inhibition for neural induction. To address these questions, we performed a detailed analysis of the regulation of the soxB1 gene, sox3, one of the earliest genes expressed in the neuroectoderm. Using ectodermal explant assays, we analyzed the role of BMP, Wnt and FGF signaling in the regulation of sox3 and the closely related soxB1 gene, sox2. Our results demonstrate that both sox3 and sox2 are induced in response to BMP antagonism, but by distinct mechanisms and that the activation of both genes is independent of FGF signaling. However, both require FGF for the maintenance of their expression. Finally, sox3 genomic elements were identified and characterized and an element required for BMP-mediated repression via Vent proteins was identified through the use of transgenesis and computational analysis. Interestingly, none of the elements required for sox3 expression were identified in the sox2 locus. Together our data indicate that two closely related genes have unique mechanisms of gene regulation at the onset of neural development.

Indexed as

Signal TransductionAnimalsBase SequenceBone Morphogenetic ProteinsCarrier ProteinsDNA-Binding ProteinsEmbryo, NonmammalianFibroblast Growth FactorsHigh Mobility Group ProteinsHMGB ProteinsHomeodomain ProteinsMolecular Sequence DataNeural PlateNoggin ProteinProtein BiosynthesisSOXB1 Transcription FactorsBone Morphogenetic ProteinsCarrier ProteinsDNA-Binding ProteinsFibroblast Growth FactorsHigh Mobility Group ProteinsHMGB ProteinsHomeodomain ProteinsNoggin Proteinsox2 protein, XenopusSox3 protein, XenopusSOXB1 Transcription FactorsTranscription Factorsventx2.1 protein, XenopusXenopus Proteins

Identifiers

PMID18031719
PMCPMC2211421
OpenAlexW2086806813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.