ArticleGenome biology2007
Analysis of molecular inversion probe performance for allele copy number determination.
Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
32 citing papers in PubMed.
- Improved risk-stratification for posterior fossa ependymoma of childhood considering clinical, histological and genetic features - a retrospective analysis of the HIT ependymoma trial cohort.Acta neuropathologica communications · 2019Trial
- Diagnosing Cutaneous Melanocytic Tumors in the Molecular Era: Updates and Review of Literature.Dermatopathology (Basel, Switzerland) · 2024Review
- [Neuropathology of medulloblastomas and other CNS embryonal tumors : Precision diagnostics through the integration of genetic markers].Der Pathologe · 2019Review
- Genetic evaluation of juvenile xanthogranuloma: genomic abnormalities are uncommon in solitary lesions, advanced cases may show more complexity.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2017Article
- Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study.BMC genomics · 2017Article
- Genomic characteristics of trastuzumab-resistant Her2-positive metastatic breast cancer.Journal of cancer research and clinical oncology · 2017Article
- Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue.Genome medicine · 2016Article
- Molecular Inversion Probes for targeted resequencing in non-model organisms.Scientific reports · 2016Article
- Copy number analysis of ductal carcinoma in situ with and without recurrence.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2015Article
- microDuMIP: target-enrichment technique for microarray-based duplex molecular inversion probes.Nucleic acids research · 2015Article
- Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient Outcomes.PloS one · 2015Article
- Observations of the genomic landscape beyond 1p19q deletions and EGFR amplification in glioma.Molecular cytogenetics · 2015Article
- Bayesian hierarchical structured variable selection methods with application to MIP studies in breast cancer.Journal of the Royal Statistical Society. Series C, Applied statistics · 2014Article
- Resistance to BRAF inhibition in BRAF-mutant colon cancer can be overcome with PI3K inhibition or demethylating agents.Clinical cancer research : an official journal of the American Association for Cancer Research · 2013Article
- Overexpression of insulin-like growth factor 1 receptor and frequent mutational inactivation of SDHA in wild-type SDHB-negative gastrointestinal stromal tumors.Genes, chromosomes & cancer · 2013Article
- Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.Science (New York, N.Y.) · 2012Article
- Genomic aberrations in normal tissue adjacent to HER2-amplified breast cancers: field cancerization or contaminating tumor cells?Breast cancer research and treatment · 2012Article
- Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents.Cancer discovery · 2012Article
- Genome wide copy number analysis of paediatric Burkitt lymphoma using formalin-fixed tissues reveals a subset with gain of chromosome 13q and corresponding miRNA over expression.British journal of haematology · 2011Article
- Copy number imbalances between screen- and symptom-detected breast cancers and impact on disease-free survival.Cancer prevention research (Philadelphia, Pa.) · 2011Article
Corrections and comments
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Authors and funding
13 authors.
Funding
Abstract
We have developed a new protocol for using molecular inversion probes to accurately and specifically measure allele copy number. The new protocol provides for significant improvements, including the reduction of input DNA (from 2 mug) by more than 25-fold (to 75 ng total genomic DNA), higher overall precision resulting in one order of magnitude lower false positive rate, and greater dynamic range with accurate absolute copy number up to 60 copies.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.