Evidence map›Paper›PMID 18027003›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2008

Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.

Liliya A Yatsunyk, J Allen Easton, Lydia R Kim, Stacy A Sugarbaker, Brian Bennett, Robert M Breece, Ivan I Vorontsov, David L Tierney, Michael W Crowder, Amy C Rosenzweig

Open access · greenAbstract read
In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 116 citations in OpenAlex.

  1. Trial
  2. Article
  3. Prokaryotic mechanosensitive channels mediate copper influx.Protein science : a publication of the Protein Society · 2025
    Article
  4. Review
  5. Article
  6. Two zinc ABC transporters contribute toFrontiers in plant science · 2025
    Article
  7. Review
  8. Article
  9. Structure and Function of the Zinc Binding Protein ZrgA fromInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Conformational flexibility in the zinc solute-binding protein ZnuA.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  12. Article
  13. Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Conformation of the Solute-Binding Protein AdcAII Influences Zinc Uptake inFrontiers in cellular and infection microbiology · 2021
    Article
  18. Review
  19. Review
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Liliya A YatsunykDepartment of Biochemistry, Northwestern University, Evanston, IL, 60208, USA. amyr@northwestern.edu.
J Allen Easton
Lydia R Kim
Stacy A Sugarbaker
Brian Bennett
Robert M Breece
Ivan I Vorontsov
David L Tierney
Michael W Crowder
Amy C Rosenzweig
Northwestern University · USMiami University · USUniversity of New Mexico · USMedical College of Wisconsin · US

Funding

ZUNI HEALTH INITIATIVE-PILOT STUDYP20RR016480 · NCRR · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI ZHANG, PENG F · 2001 to 2011
$33.7M
TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
Structure and Specificity in Metal Ion HomeostasisR01GM058518 · NIGMS · NORTHWESTERN UNIVERSITY · PI ROSENZWEIG, AMY C. · 1999 to 2015
$4.4M
Substrate &Inhibitor Binding in Leucine AminopeptidaseR01AI056231 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI BENNETT, BRIAN · 2003 to 2007
$923k
Zn(II) metallochaperones in E. coliR21GM079411 · NIGMS · MIAMI UNIVERSITY OXFORD · PI CROWDER, MICHAEL W · 2006 to 2007
$380k
NCRR NIH HHS P20 RR016480NCRR NIH HHS P20RR-16480NIAID NIH HHS AI056231NIAID NIH HHS R01 AI056231NIBIB NIH HHS EB001980NIBIB NIH HHS P41 EB001980NIGMS NIH HHS GM079411NIGMS NIH HHS GM58518NIGMS NIH HHS R01 GM058518NIGMS NIH HHS R21 GM079411
6 · The paper itself

Abstract

ZnuA is the periplasmic Zn(2+)-binding protein associated with the high-affinity ATP-binding cassette ZnuABC transporter from Escherichia coli. Although several structures of ZnuA and its homologs have been determined, details regarding metal ion stoichiometry, affinity, and specificity as well as the mechanism of metal uptake and transfer remain unclear. The crystal structures of E. coli ZnuA (Eco-ZnuA) in the apo, Zn(2+)-bound, and Co(2+)-bound forms have been determined. ZnZnuA binds at least two metal ions. The first, observed previously in other structures, is coordinated tetrahedrally by Glu59, His60, His143, and His207. Replacement of Zn(2+) with Co(2+) results in almost identical coordination geometry at this site. The second metal binding site involves His224 and several yet to be identified residues from the His-rich loop that is unique to Zn(2+) periplasmic metal binding receptors. Electron paramagnetic resonance and X-ray absorption spectroscopic data on CoZnuA provide additional insight into possible residues involved in this second site. The second site is also detected by metal analysis and circular dichroism (CD) titrations. Eco-ZnuA binds Zn(2+) (estimated K (d) < 20 nM), Co(2+), Ni(2+), Cu(2+), Cu(+), and Cd(2+), but not Mn(2+). Finally, conformational changes upon metal binding observed in the crystal structures together with fluorescence and CD data indicate that only Zn(2+) substantially stabilizes ZnuA and might facilitate recognition of ZnuB and subsequent metal transfer.

Indexed as

AbsorptionAnilino NaphthalenesulfonatesATP-Binding Cassette TransportersBinding SitesCarrier ProteinsCircular DichroismCobaltCrystallography, X-RayElectron Spin Resonance SpectroscopyEscherichia coliEscherichia coli ProteinsFluorescenceMetalsModels, MolecularPeriplasmProtein Structure, Secondary8-anilino-1-naphthalenesulfonic acidAnilino NaphthalenesulfonatesATP-Binding Cassette TransportersCarrier ProteinsCobaltEscherichia coli ProteinsMetalsZinczinc-binding proteinZnuA protein, E coli

Identifiers

PMID18027003
PMCPMC2630496
OpenAlexW1983705122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.