ArticlePlant cell reports2008
Isolation and characterization of genomic retrotransposon sequences from octoploid strawberry (Fragaria x ananassa Duch.).
Article in Plant cell reports, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed, 44 citations in OpenAlex.
- An Integrated Metabolomic and Gene Expression Analysis of 'Sachinoka' Strawberry and Its Somaclonal Mutant Reveals Fruit Color and Volatiles Differences.Plants (Basel, Switzerland) · 2022Article
- Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine PhanerogamLife (Basel, Switzerland) · 2020Article
- A computational genome-wide analysis of long terminal repeats retrotransposon expression in sunflower roots (Helianthus annuus L.).Genetica · 2020Article
- Genome-Wide Identification and Analysis of High-Copy-Number LTR Retrotransposons in Asian Pears.Genes · 2019Article
- FveRGA1, encoding a DELLA protein, negatively regulates runner production in Fragaria vesca.Planta · 2018Article
- Over-expression ofFrontiers in plant science · 2017Article
- Characterization, Genomic Organization, Abundance, and Chromosomal Distribution of Ty1-copia Retrotransposons inFrontiers in plant science · 2017Article
- Involvement of Auxin and Brassinosteroid in Dwarfism of Autotetraploid Apple (Malus × domestica).Scientific reports · 2016Article
- Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome.Mobile DNA · 2016Article
- Reverse transcriptase domain sequences from tree peony (Biotechnology, biotechnological equipment · 2014Article
- Isolation and characterization of reverse transcriptase fragments of LTR retrotransposons from the genome of Chenopodium quinoa (Amaranthaceae).Plant cell reports · 2013Article
- Isolation and characterization of Ty1-copia group of LTRs in genome of three species of Datura: D. innoxia, D. stramonium and D. metel.Physiology and molecular biology of plants : an international journal of functional plant biology · 2011Article
- Identification and characterization of jute LTR retrotransposons:: Their abundance, heterogeneity and transcriptional activity.Mobile genetic elements · 2011Article
- FaRE1: a transcriptionally active Ty1-copia retrotransposon in strawberry.Journal of plant research · 2010Article
- An examination of targeted gene neighborhoods in strawberry.BMC plant biology · 2010Article
- De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley.BMC genomics · 2009Article
- Occurrence and abundance of a mariner-like element in freshwater and terrestrial planarians (Platyhelminthes, Tricladida) from southern Brazil.Genetics and molecular biology · 2009Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Strawberry (Fragaria spp.) is a kind of herbaceous perennial plant that propagates vegetatively. The conserved domains of reverse transcriptase (RT) genes of Ty1-copia and Ty3-gypsy groups of LTR retrotransposons were amplified from the cultivated strawberry (Fragaria x ananassa Duch.). Sequence analysis of clones demonstrated that 5 of 19 Ty1-copia group unique sequences and 2 of 10 Ty3-gypsy unique sequences in F. x ananassa genome possessed either stop codon or frameshift. Ty1-copia group sequences are highly heterogeneous (divergence ranged from 1 to 69.8%), but the Ty3-gypsy group sequences are less (divergence ranged from 1 to 10%). Southern dot blot hybridization result suggested that both of the LTR retrotransposons are present in the genome of cultivated strawberry with high copy number (Ty1-copia group 2,875 Ty3-gypsy group 348). RT-PCR amplification from total RNA, which was extracted from leaves of micropropagated strawberry plants, did not yield either of the RT fragments. This is the first report on the presence of RT sequences of Ty1-copia and Ty3-gypsy group retrotransposons in F. x ananassa genome.
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