Evidence map›Paper›PMID 18026095›Full record

ArticleNature chemical biology2008

Unnatural substrates reveal the importance of 8-oxoguanine for in vivo mismatch repair by MutY.

Alison L Livingston, Valerie L O'Shea, Taewoo Kim, Eric T Kool, Sheila S David

Abstract read
In one paragraph

Article in Nature chemical biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Structural Basis for Nucleobase Activation by the Adenine DNA Glycosylase MutY.Chembiochem : a European journal of chemical biology · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Chemical Tools for the Study of DNA Repair.Accounts of chemical research · 2022
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Chemical Analysis of DNA Damage.Analytical chemistry · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alison L LivingstonDepartment of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, USA.
Valerie L O'Shea
Taewoo Kim
Eric T Kool
Sheila S David

Funding

RECOGNITION AND REPAIR OF MISMATCHED DNA BY MUTYR01CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 2000 to 2025
$5.6M
MULTIDISCIPLINARY CANCER RESEARCH TRAINING PROGRAMT32CA093247 · NCI · UNIVERSITY OF UTAH · PI AYER, DONALD E · 2002 to 2011
$5.2M
Probing Nucleotide Recognition in the Genetic Information PathwayR01GM072705 · NIGMS · STANFORD UNIVERSITY · PI KOOL, ERIC T. · 2004 to 2012
$2.4M
PREDOCTORAL TRAINING PROGRAM IN BIOLOGICAL CHEMISTRYT32GM008537 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1993 to 2005
$1.4M
G/A MISMATCH RECOGNITION AND REPAIR BY E COLI MUTYR29CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 1995 to 1999
–
NCI NIH HHS 5P30CA43014NCI NIH HHS CA093247NCI NIH HHS CA67985NCI NIH HHS R01 CA067985NCI NIH HHS R29 CA067985NCI NIH HHS T32 CA093247NIGMS NIH HHS GM072705NIGMS NIH HHS GM08537NIGMS NIH HHS R01 GM072705NIGMS NIH HHS T32 GM008537
6 · The paper itself

Abstract

Escherichia coli MutY has an important role in preventing mutations associated with the oxidative lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (OG) in DNA by excising adenines from OG.A mismatches as the first step of base excision repair. To determine the importance of specific steps in the base pair recognition and base removal process of MutY, we have evaluated the effects of modifications of the OG.A substrate on the kinetics of base removal, mismatch affinity and repair to G-C in an E. coli-based assay. Notably, adenine modification was tolerated in the cellular assay, whereas modification of OG resulted in minimal cellular repair. High affinity for the mismatch and efficient base removal required the presence of OG. Taken together, these results suggest that the presence of OG is a critical feature that is necessary for MutY to locate OG.A mismatches and select the appropriate adenines for excision to initiate repair in vivo before replication.

Indexed as

DNA DamageDNA Mismatch RepairEscherichia coli8-Hydroxy-2'-DeoxyguanosineAdenineBase PairingBase SequenceDeoxyguanosineDNA GlycosylasesGuanineKineticsMolecular Sequence DataOligonucleotidesPlasmidsSubstrate Specificity8-Hydroxy-2'-Deoxyguanosine8-hydroxyguanineAdenineDeoxyguanosineDNA GlycosylasesGuaninemutY adenine glycosylaseOligonucleotides

Identifiers

PMID18026095
PMCPMC2759348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.