Evidence map›Paper›PMID 18025092›Full record

ArticleInfection and immunity2008

Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa.

Damon W Ellison, Tina R Clark, Daniel E Sturdevant, Kimmo Virtaneva, Stephen F Porcella, Ted Hackstadt

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Infection and immunity, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. mSphere · 2025
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  5. mBio · 2024
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  6. PathogenicJournal of bacteriology · 2024
    Review
  7. Article
  8. Article
  9. Molecular Evidence ofMicroorganisms · 2023
    Article
  10. Genetic typing of isolates of Rickettsia typhi.PLoS neglected tropical diseases · 2022
    Article
  11. Article
  12. Subversion of host cell signaling: The arsenal of Rickettsial species.Frontiers in cellular and infection microbiology · 2022
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Significant Growth byPathogens (Basel, Switzerland) · 2021
    Article
  18. Comparative Analysis of Infection byPathogens (Basel, Switzerland) · 2020
    Article
  19. Article
  20. Spotted Fever GroupInfection and immunity · 2019
    Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Damon W EllisonLaboratory of Intracellular Parasites, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases,National Institutes of Health, Hamilton, Montana 59840, USA.
Tina R Clark
Daniel E Sturdevant
Kimmo Virtaneva
Stephen F Porcella
Ted Hackstadt
National Institute of Allergy and Infectious Diseases · USNational Institutes of Health · US

Funding

Infectious Diseases Research Technologies Core - RMLZICAI001052 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHERRY, JAMES · 2009 to 2025
$133.3M
Biology of RickettsiaZIAAI000977 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HACKSTADT, TED · 2009 to 2025
$14.2M
Infectious Diseases Research Technologies Core - RMLZ01AI001052 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HOHMAN, ROBERT · 2008 to 2008
$5.6M
Biology of RickettsiaZ01AI000977 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI HACKSTADT, DAVID (TED) · 2006 to 2008
$1.7M
Intramural NIH HHS
6 · The paper itself

Abstract

Rickettsia rickettsii is an obligate intracellular pathogen that is the causative agent of Rocky Mountain spotted fever. To identify genes involved in the virulence of R. rickettsii, the genome of an avirulent strain, R. rickettsii Iowa, was sequenced and compared to the genome of the virulent strain R. rickettsii Sheila Smith. R. rickettsii Iowa is avirulent in a guinea pig model of infection and displays altered plaque morphology with decreased lysis of infected host cells. Comparison of the two genomes revealed that R. rickettsii Iowa and R. rickettsii Sheila Smith share a high degree of sequence identity. A whole-genome alignment comparing R. rickettsii Iowa to R. rickettsii Sheila Smith revealed a total of 143 deletions for the two strains. A subsequent single-nucleotide polymorphism (SNP) analysis comparing Iowa to Sheila Smith revealed 492 SNPs for the two genomes. One of the deletions in R. rickettsii Iowa truncates rompA, encoding a major surface antigen (rickettsial outer membrane protein A [rOmpA]) and member of the autotransporter family, 660 bp from the start of translation. Immunoblotting and immunofluorescence confirmed the absence of rOmpA from R. rickettsii Iowa. In addition, R. rickettsii Iowa is defective in the processing of rOmpB, an autotransporter and also a major surface antigen of spotted fever group rickettsiae. Disruption of rompA and the defect in rOmpB processing are most likely factors that contribute to the avirulence of R. rickettsii Iowa. Genomic differences between the two strains do not significantly alter gene expression as analysis of microarrays revealed only four differences in gene expression between R. rickettsii Iowa and R. rickettsii strain R. Although R. rickettsii Iowa does not cause apparent disease, infection of guinea pigs with this strain confers protection against subsequent challenge with the virulent strain R. rickettsii Sheila Smith.

Indexed as

Genome, BacterialGenomicsAnimalsAntibodies, BacterialAntigens, BacterialBacterial Outer Membrane ProteinsChlorocebus aethiopsDNA, BacterialFemaleGene Expression ProfilingGuinea PigsMolecular Sequence DataOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideRickettsia rickettsiiRocky Mountain Spotted FeverAntibodies, BacterialAntigens, BacterialBacterial Outer Membrane ProteinsDNA, BacterialrOmpA, RickettsiaVirulence Factors

Identifiers

PMID18025092
PMCPMC2223442
OpenAlexW2115773189

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.